| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 4 | Knot | K 41 | 413-617 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4BRU |
A |
Unknot |
29.33% |
59.38% |
21.88% |
1.47 |
..Target: DRFE--------LVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKT--FTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_4 |
Sun Jul 23 14:58:54 2017 JOB CREATED : 2f1123b0-a19b-4d7a-97de-0f2bd65b8b9d Sun Jul 23 22:02:01 2017 STATUS CHANGED : N -> R Sun Jul 23 22:02:01 2017 INFO : JOB STARTED AT: 2017-07-23 22:02:01.966627 Sun Jul 23 22:02:01 2017 INFO : METHOD: 1 Sun Jul 23 22:02:02 2017 INFO : Precalculated profile found... Sun Jul 23 22:02:02 2017 INFO : Homologue pool found... Sun Jul 23 22:02:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 22:10:27 2017 INFO : Starting homologue filtering... Sun Jul 23 22:11:31 2017 INFO : Getting structures from PDB... Sun Jul 23 22:11:35 2017 INFO : Creating modelling alignment... Sun Jul 23 22:11:35 2017 INFO : Modelling... Sun Jul 23 22:34:03 2017 INFO : Model 1 built Sun Jul 23 22:34:03 2017 INFO : Validating Calpha distances... Sun Jul 23 22:34:03 2017 INFO : Model 1 distances correct: True Sun Jul 23 22:34:03 2017 INFO : Modelling... Sun Jul 23 23:30:56 2017 INFO : Model 2 built Sun Jul 23 23:30:56 2017 INFO : Validating Calpha distances... Sun Jul 23 23:30:56 2017 INFO : Model 2 distances correct: True Sun Jul 23 23:30:56 2017 INFO : Modelling... Sun Jul 23 23:55:56 2017 INFO : Model 3 built Sun Jul 23 23:55:56 2017 INFO : Validating Calpha distances... Sun Jul 23 23:55:56 2017 INFO : Model 3 distances correct: True Sun Jul 23 23:55:56 2017 INFO : Modelling... Mon Jul 24 00:29:51 2017 INFO : Model 4 built Mon Jul 24 00:29:51 2017 INFO : Validating Calpha distances... Mon Jul 24 00:29:51 2017 INFO : Model 4 distances correct: True Mon Jul 24 00:29:51 2017 INFO : Modelling... Mon Jul 24 01:03:41 2017 INFO : Model 5 built Mon Jul 24 01:03:41 2017 INFO : Validating Calpha distances... Mon Jul 24 01:03:41 2017 INFO : Model 5 distances correct: True Mon Jul 24 01:04:33 2017 INFO : Finished modelling Mon Jul 24 01:04:33 2017 STATUS CHANGED : R -> P Mon Jul 24 01:04:33 2017 INFO : Checking topology... Mon Jul 24 01:43:38 2017 INFO : Knot matrices done... Mon Jul 24 01:44:59 2017 INFO : Some knots found! Mon Jul 24 01:44:59 2017 INFO : No lassos found... Mon Jul 24 01:44:59 2017 INFO : Finishing... Mon Jul 24 01:44:59 2017 INFO : Job done Mon Jul 24 01:44:59 2017 STATUS CHANGED : P -> F Mon Jul 24 01:44:59 2017 STATUS CHANGED : F -> F |
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