| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 7151+31 | 15-127 | 127-152 | -- | -- | |||
| Model 2 | Knot | K 715131 | 6-148 | -- | -- | -- | |||
| Model 3 | Knot | K 7151+31 | 7-148 | -- | -- | -- | |||
| Model 4 | Slipknot | S 917151+31 | 15-128 | 128-152 | -- | -- | |||
| Model 5 | Knot | K 7151+31 | 6-148 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1H9F |
A |
Unknot |
89.47% |
14.75% |
14.75% |
1.48 |
..Target: MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG------ |
||||
1H9E |
A |
Unknot |
96.43% |
8.20% |
8.20% |
1.45 |
..Target: MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG |
||||
| PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | RNRPPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTE |
|||
|---|---|---|---|---|---|---|---|---|---|
| 1H9F | A | Unknot | 14.75% | 14.75% | -------------------------------------------------------RQEDKDDLDVTE |
||||
| 1H9E | A | Unknot | 8.20% | 8.20% | RNRPPLPA----------------------------------------------------------- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Jul 20 08:35:47 2017 JOB CREATED : 5296adf7-f24b-468f-a360-9300b3bb2d76 Thu Jul 20 08:36:02 2017 STATUS CHANGED : N -> R Thu Jul 20 08:36:02 2017 INFO : JOB STARTED AT: 2017-07-20 08:36:02.381590 Thu Jul 20 08:36:02 2017 INFO : METHOD: 1 Thu Jul 20 08:36:02 2017 INFO : Precalculated profile found... Thu Jul 20 08:36:02 2017 INFO : Homologue pool found... Thu Jul 20 08:36:02 2017 INFO : Verifying structure sequences of homologues... Thu Jul 20 08:36:07 2017 INFO : Starting homologue filtering... Thu Jul 20 08:36:08 2017 INFO : Getting structures from PDB... Thu Jul 20 08:36:11 2017 INFO : Creating modelling alignment... Thu Jul 20 08:36:11 2017 INFO : Modelling... Thu Jul 20 08:39:10 2017 INFO : Model 1 built Thu Jul 20 08:39:10 2017 INFO : 1 gaps will be remodelled Thu Jul 20 08:49:36 2017 INFO : Validating Calpha distances... Thu Jul 20 08:49:36 2017 INFO : Model 1 distances correct: True Thu Jul 20 08:49:36 2017 INFO : Modelling... Thu Jul 20 08:52:45 2017 INFO : Model 2 built Thu Jul 20 08:52:45 2017 INFO : 1 gaps will be remodelled Thu Jul 20 09:06:54 2017 INFO : Validating Calpha distances... Thu Jul 20 09:06:54 2017 INFO : Model 2 distances correct: True Thu Jul 20 09:06:54 2017 INFO : Modelling... Thu Jul 20 09:11:23 2017 INFO : Model 3 built Thu Jul 20 09:11:23 2017 INFO : 1 gaps will be remodelled Thu Jul 20 09:25:57 2017 INFO : Validating Calpha distances... Thu Jul 20 09:25:57 2017 INFO : Model 3 distances correct: True Thu Jul 20 09:25:57 2017 INFO : Modelling... Thu Jul 20 09:30:18 2017 INFO : Model 4 built Thu Jul 20 09:30:18 2017 INFO : 1 gaps will be remodelled Thu Jul 20 09:45:47 2017 INFO : Validating Calpha distances... Thu Jul 20 09:45:47 2017 INFO : Model 4 distances correct: True Thu Jul 20 09:45:47 2017 INFO : Modelling... Thu Jul 20 09:50:53 2017 INFO : Model 5 built Thu Jul 20 09:50:53 2017 INFO : 1 gaps will be remodelled Thu Jul 20 10:05:44 2017 INFO : Validating Calpha distances... Thu Jul 20 10:05:44 2017 INFO : Model 5 distances correct: True Thu Jul 20 10:05:54 2017 INFO : Finished modelling Thu Jul 20 10:05:54 2017 STATUS CHANGED : R -> P Thu Jul 20 10:05:54 2017 INFO : Checking topology... Thu Jul 20 10:14:13 2017 INFO : Knot matrices done... Thu Jul 20 10:16:47 2017 INFO : Some knots found! Thu Jul 20 10:16:47 2017 INFO : No lassos found... Thu Jul 20 10:16:47 2017 INFO : Finishing... Thu Jul 20 10:16:47 2017 INFO : Job done Thu Jul 20 10:16:47 2017 STATUS CHANGED : P -> F Thu Jul 20 10:16:47 2017 STATUS CHANGED : F -> F |
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