Job name:

1Z8G chain A

52a014d1-90e3-45ce-a086-a4742d35419c
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 4
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -35052
Model 2 Non-trivial -35172
Model 3 Non-trivial -35685
Model 4 Non-trivial -33764
Model 5 Non-trivial -31715
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Lasso L -1C -- -- 29-71
Model 2 Lasso L -1C -- -- 29-71
Model 3 Slipknot S -31 112-310 310-324 -- --
Lasso L -1C -- -- 29-71
Model 4 Lasso L -1C -- -- 29-71
Model 5 Lasso L -1C -- -- 29-71
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 3
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Help
PDB
code		 Chain Entanglement
type		 Seq
identity		 Total gap
coverage		 Total gap
identity		 RMSD [Å] Pairwise alignment to the target: gap


1BML
A
Unknot
44.80%
75.00%
25.00%
0.86

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: --------------------------------------------------------------------------------------------------AAPSFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

1BML
B
Unknot
44.80%
75.00%
25.00%
0.87

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: --------------------------------------------------------------------------------------------------AAPSFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

1DDJ
A
Unknot
44.53%
75.00%
25.00%
1.02

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------SFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

1DDJ
B
Unknot
44.53%
75.00%
25.00%
1.00

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------SFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

1DDJ
C
Unknot
44.53%
75.00%
25.00%
1.02

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------SFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

1DDJ
D
Unknot
44.53%
75.00%
25.00%
1.02

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGR-----RKLPVDRIVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------SFDCGKPQVEPKKCP-GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-EKSPRPSSYKVILGAHQEVNLEPH-----VQEIEVSRLFL-------EPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVC----FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW----------IEGVMRNN

5CE1
A
Unknot
99.72%
25.00%
25.00%
0.65

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKL----IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--GLQLGVQAVVYHGGYLPFR-PNS-ENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL

1O5E
H
Unknot
100.00%
25.00%
25.00%
0.50

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF-------NSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL

1O5F
H
Unknot
100.00%
25.00%
25.00%
0.51

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF-------NSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL

1P57
B
Unknot
100.00%
25.00%
25.00%
0.48

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF-------NSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQ-

1EPT
A
Unknot
51.16%
25.00%
25.00%
0.79

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YK

4DGJ
A
Unknot
44.68%
25.00%
25.00%
0.78

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG---AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL-
Template: ------------------------------------------------------------------------------------------------------------------IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVIN----P--HYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ-QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE----NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEW-------------IQSFLH

4DGJ
B
Unknot
44.68%
25.00%
25.00%
0.80

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG---AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL-
Template: ------------------------------------------------------------------------------------------------------------------IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVIN----P--HYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ-QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE----NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEW-------------IQSFLH

4DGJ
C
Unknot
44.87%
25.00%
25.00%
0.82

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG---AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVIN----P--HYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ-QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE----NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEW-------------IQSFL

4DGJ
D
Unknot
44.87%
25.00%
25.00%
0.79

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG---AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVIN----P--HYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ-QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE----NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEW-------------IQSFL

2HNT
C
Unknot
49.25%
25.00%
25.00%
0.84

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSL--RYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ------------------------------------------------------------------------------------------------------------------IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC------------------------------------LLYPPW-DKNFTE--NDL-LVRI------------------------------------------------------------------------------------------------------------------------------------------------------GKHS

3T2N
A
Unknot
99.12%
0.00%
0.00%
0.88

..Target: -EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: QEPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLP-------RDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG----------VLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP--------GDSGGPFVCEDSISRTPRWRLCGIVSL------AQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL

3T2N
B
Unknot
99.40%
0.00%
0.00%
0.94

..Target: -EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: QEPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGANGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKL----------TSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG----------VLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP--------GDSGGPFVCEDSISRTPRWRLCGIVSW------AQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQ-

1O5E
L
Unknot
98.18%
0.00%
0.00%
0.62

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL-
Template: -PLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLP

1O5F
L
Unknot
98.18%
0.00%
0.00%
0.61

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL-
Template: -PLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLP

1P57
A
Unknot
98.18%
0.00%
0.00%
0.60

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL-
Template: -PLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLP

1AKS
B
Unknot
47.96%
0.00%
0.00%
0.74

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSGSSYPSLLQCLKAPVLSNSSCK--SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVC--------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI----------AAN

1EPT
C
Unknot
47.96%
0.00%
0.00%
0.78

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSGSSYPSLLQCLKAPVLSNSSCK--SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVC--------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI----------AAN

1EZX
C
Unknot
51.43%
0.00%
0.00%
0.93

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -------------------------------------------------------------------------------------------------------------------------------------------CGGSLINSQWVVSAAHCY------KS--------------------ASKSIVHPSY------NSNTLNNDIMLIKLK-----------ISLPTS--CASAGTQCLI-----------------CLKAPILSDSSCKSA--YPGQITSNMFCAGYL------CQGDSGGPVVC--------SGKLQGIVSWGSGC--AQKPGVYTKVCNYVSWIKQTI----------ASN

1UHB
B
Unknot
47.96%
0.00%
0.00%
0.80

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSGSSYPSLLQCLKAPVLSDSSCK--SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVC--------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI----------AAN

2HNT
F
Unknot
46.00%
0.00%
0.00%
0.84

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGY--PEG--GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSVLQVVNLPIVERPVCK--DSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN--NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKW-----------IQKVIDQ

2PKS
C
Unknot
46.08%
0.00%
0.00%
0.86

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGY--PEG--GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQPSVLQVVNLPIVERPVCK--DSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN--NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKW-----------IQKVIDQ

3PO1
C
Unknot
46.08%
0.00%
0.00%
0.82

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGY--PEG--GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQPSVLQVVNLPIVERPVCK--DSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN--NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKW-----------IQKVIDQ

1RIW
C
Unknot
46.08%
0.00%
0.00%
0.87

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGY--PEG--GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQPSVLQVVNLPIVERPVCK--DSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN--NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKW-----------IQKVIDQ

1BHX
F
Unknot
46.67%
0.00%
0.00%
0.86

..Target: EPLYPVQVSSADARLMVFDKTEGTWRLLCSSRSNARVAGLSCEEMGFLRALTHSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGY--PEG--GIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMVTQL
Template: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GQPSVLQVVNLPIVERPVCK--DSTRIRITDNMFCAGYKPDEGKRG-DACEGDSGGPFVMKSPFN--NRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE--------
Help
PDB
code		 Chain Knot
type		 Gap
coverage		 Gap
identity		 >Target_Sequence: gap

KLPVDRIVGG
1BML A Unknot 25.00% 75.00%

KCP-GRVVGG
1BML B Unknot 25.00% 75.00%

KCP-GRVVGG
1DDJ A Unknot 25.00% 75.00%

KCP-GRVVGG
1DDJ B Unknot 25.00% 75.00%

KCP-GRVVGG
1DDJ C Unknot 25.00% 75.00%

KCP-GRVVGG
1DDJ D Unknot 25.00% 75.00%

KCP-GRVVGG
5CE1 A Unknot 25.00% 25.00%

KL----IVGG
1O5E H Unknot 25.00% 25.00%

------IVGG
1O5F H Unknot 25.00% 25.00%

------IVGG
1P57 B Unknot 25.00% 25.00%

------IVGG
1EPT A Unknot 25.00% 25.00%

------IVGG
4DGJ A Unknot 25.00% 25.00%

------IVGG
4DGJ B Unknot 25.00% 25.00%

------IVGG
4DGJ C Unknot 25.00% 25.00%

------IVGG
4DGJ D Unknot 25.00% 25.00%

------IVGG
2HNT C Unknot 25.00% 25.00%

------IVEG
3T2N A Unknot 0.00% 0.00%

KLP-------
3T2N B Unknot 0.00% 0.00%

KL--------
1O5E L Unknot 0.00% 0.00%

----------
1O5F L Unknot 0.00% 0.00%

----------
1P57 A Unknot 0.00% 0.00%

----------
1AKS B Unknot 0.00% 0.00%

----------
1EPT C Unknot 0.00% 0.00%

----------
1EZX C Unknot 0.00% 0.00%

----------
1UHB B Unknot 0.00% 0.00%

----------
2HNT F Unknot 0.00% 0.00%

----------
2PKS C Unknot 0.00% 0.00%

----------
3PO1 C Unknot 0.00% 0.00%

----------
1RIW C Unknot 0.00% 0.00%

----------
1BHX F Unknot 0.00% 0.00%

----------

Models
Similarity profile
Modelling alignment
Raw knot fingerprint matrices:
Model_3

Tue Jul 11 17:36:29 2017	JOB CREATED : 52a014d1-90e3-45ce-a086-a4742d35419c
Wed Jul 12 16:28:02 2017	STATUS CHANGED : N -> R
Wed Jul 12 16:28:02 2017	INFO : JOB STARTED AT: 2017-07-12 16:28:02.278489
Wed Jul 12 16:28:02 2017	INFO : METHOD: 1
Wed Jul 12 16:28:02 2017	INFO : Precalculated profile found...
Wed Jul 12 16:28:02 2017	INFO : Homologue pool found...
Wed Jul 12 16:28:02 2017	INFO : Verifying structure sequences of homologues...
Wed Jul 12 17:10:01 2017	INFO : Starting homologue filtering...
Wed Jul 12 17:10:48 2017	INFO : Getting structures from PDB...
Wed Jul 12 17:11:40 2017	INFO : Creating modelling alignment...
Wed Jul 12 17:11:40 2017	INFO : Modelling...
Wed Jul 12 17:52:52 2017	INFO : Finished modelling
Wed Jul 12 17:52:52 2017	STATUS CHANGED : R -> P
Wed Jul 12 17:52:52 2017	INFO : Checking topology...
Wed Jul 12 18:05:18 2017	INFO : Knot matrices done...
Wed Jul 12 18:05:38 2017	INFO : Some knots found!
Wed Jul 12 18:05:47 2017	INFO : Some lassos found!
Wed Jul 12 18:05:47 2017	INFO : Finishing...
Wed Jul 12 18:05:48 2017	INFO : Job done
Wed Jul 12 18:05:48 2017	STATUS CHANGED : P -> F
Wed Jul 12 18:05:48 2017	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling