Job name:

5E4R chain A

92424ec8-e6f2-453f-92ac-884f4a73cbb7
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 10
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -70549
Model 2 Non-trivial -70532
Model 3 Non-trivial -70669
Model 4 Non-trivial -70514
Model 5 Non-trivial -70290
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Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Knot K 4131 225-346 -- -- --
Model 2 Knot K 4131 224-346 -- -- --
Model 3 Knot K 4131 224-346 -- -- --
Model 4 Knot K 4131 224-346 -- -- --
Model 5 Knot K 4131 225-346 -- -- --
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
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Entanglement typespdbTitle

GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling