| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 2 | Knot | K 41 | 417-600 | -- | -- | -- | |||
| Model 3 | Knot | K 41 | 417-600 | -- | -- | -- | |||
| Model 4 | Knot | K 41 | 417-599 | -- | -- | -- | |||
| Model 5 | Knot | K 41 | 417-600 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4BRU |
A |
Unknot |
29.33% |
59.38% |
21.88% |
1.44 |
..Target: DRFE--------LVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKT--FTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGDRDHVAIFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTDEMVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRATVAAEDKAEYKTKAAPKLSKMTKKERQKVVEQMEHEMKEAAKALDFERAAELRDLL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_2 Model_3 Model_4 Model_5 |
Sun Jul 23 15:14:31 2017 JOB CREATED : a4dfb0a2-ef66-4459-86ab-2ee2902013a7 Mon Jul 24 03:41:02 2017 STATUS CHANGED : N -> R Mon Jul 24 03:41:02 2017 INFO : JOB STARTED AT: 2017-07-24 03:41:02.194215 Mon Jul 24 03:41:02 2017 INFO : METHOD: 1 Mon Jul 24 03:41:02 2017 INFO : Precalculated profile found... Mon Jul 24 03:41:02 2017 INFO : Homologue pool found... Mon Jul 24 03:41:02 2017 INFO : Verifying structure sequences of homologues... Mon Jul 24 03:51:52 2017 INFO : Starting homologue filtering... Mon Jul 24 03:52:58 2017 INFO : Getting structures from PDB... Mon Jul 24 03:53:01 2017 INFO : Creating modelling alignment... Mon Jul 24 03:53:01 2017 INFO : Modelling... Mon Jul 24 04:49:13 2017 INFO : Model 1 built Mon Jul 24 04:49:13 2017 INFO : Validating Calpha distances... Mon Jul 24 04:49:13 2017 INFO : Model 1 distances correct: True Mon Jul 24 04:49:13 2017 INFO : Modelling... Mon Jul 24 05:45:19 2017 INFO : Model 2 built Mon Jul 24 05:45:19 2017 INFO : Validating Calpha distances... Mon Jul 24 05:45:19 2017 INFO : Model 2 distances correct: True Mon Jul 24 05:45:19 2017 INFO : Modelling... Mon Jul 24 06:20:51 2017 INFO : Model 3 built Mon Jul 24 06:20:51 2017 INFO : Validating Calpha distances... Mon Jul 24 06:20:51 2017 INFO : Model 3 distances correct: True Mon Jul 24 06:20:51 2017 INFO : Modelling... Mon Jul 24 07:21:58 2017 INFO : Model 4 built Mon Jul 24 07:21:58 2017 INFO : Validating Calpha distances... Mon Jul 24 07:21:58 2017 INFO : Model 4 distances correct: True Mon Jul 24 07:21:58 2017 INFO : Modelling... Mon Jul 24 07:58:27 2017 INFO : Model 5 built Mon Jul 24 07:58:27 2017 INFO : Validating Calpha distances... Mon Jul 24 07:58:27 2017 INFO : Model 5 distances correct: True Mon Jul 24 07:59:15 2017 INFO : Finished modelling Mon Jul 24 07:59:15 2017 STATUS CHANGED : R -> P Mon Jul 24 07:59:15 2017 INFO : Checking topology... Mon Jul 24 08:54:28 2017 INFO : Knot matrices done... Mon Jul 24 09:01:07 2017 INFO : Some knots found! Mon Jul 24 09:01:07 2017 INFO : No lassos found... Mon Jul 24 09:01:07 2017 INFO : Finishing... Mon Jul 24 09:01:08 2017 INFO : Job done Mon Jul 24 09:01:08 2017 STATUS CHANGED : P -> F Mon Jul 24 09:01:08 2017 STATUS CHANGED : F -> F |
GapRepairer