| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | S 4131 | 775-925 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -747,+777,-798,+811 | ||||
| Model 2 | Knot | S 4131 | 775-925 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -749,+776,-799,+811 | ||||
| Model 3 | Knot | S 4131 | 774-925 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -749,+776,-799,+811 | ||||
| Model 4 | Slipknot | S 524131 | 774-925 | 925-947 | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -751,+776,-799,+810 | ||||
| Model 5 | Slipknot | S 4131 | 774-923 | 923-950 | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -751,+776,-799,+810 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4G1E |
A |
Unknot |
96.58% |
33.33% |
33.33% |
1.25 |
..Target: FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSPDHIFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSLQTTEKNDTVAGQGERDHLITKRDLALSEGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEFPYKNLPIEDITNSTLVTTNVT-----------------------W--------- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Nov 2 11:30:35 2017 JOB CREATED : ac9cc2a0-8db8-40b1-a040-69f2858eae53 Thu Nov 2 11:31:02 2017 STATUS CHANGED : N -> R Thu Nov 2 11:31:02 2017 INFO : JOB STARTED AT: 2017-11-02 11:31:02.438888 Thu Nov 2 11:31:02 2017 INFO : METHOD: 1 Thu Nov 2 11:31:02 2017 INFO : Building Profile... Thu Nov 2 11:31:02 2017 INFO : --E-value set to 0.001-- Thu Nov 2 11:55:03 2017 INFO : Homologue pool found... Thu Nov 2 11:55:03 2017 INFO : Verifying structure sequences of homologues... Thu Nov 2 12:01:00 2017 INFO : Starting homologue filtering... Thu Nov 2 12:02:21 2017 INFO : Getting structures from PDB... Thu Nov 2 12:03:19 2017 INFO : Creating modelling alignment... Thu Nov 2 12:03:19 2017 INFO : Modelling... Thu Nov 2 19:36:55 2017 INFO : Model 1 built Thu Nov 2 19:36:55 2017 INFO : Validating Calpha distances... Thu Nov 2 19:36:55 2017 INFO : Model 1 distances correct: True Thu Nov 2 19:36:55 2017 INFO : Modelling... Thu Nov 2 23:13:55 2017 INFO : Model 2 built Thu Nov 2 23:13:55 2017 INFO : Validating Calpha distances... Thu Nov 2 23:13:55 2017 INFO : Model 2 distances correct: True Thu Nov 2 23:13:55 2017 INFO : Modelling... Fri Nov 3 04:30:48 2017 INFO : Model 3 built Fri Nov 3 04:30:48 2017 INFO : Validating Calpha distances... Fri Nov 3 04:30:48 2017 INFO : Model 3 distances correct: True Fri Nov 3 04:30:48 2017 INFO : Modelling... Fri Nov 3 11:01:20 2017 INFO : Model 4 built Fri Nov 3 11:01:20 2017 INFO : Validating Calpha distances... Fri Nov 3 11:01:20 2017 INFO : Model 4 distances correct: True Fri Nov 3 11:01:20 2017 INFO : Modelling... Fri Nov 3 17:25:31 2017 INFO : Model 5 built Fri Nov 3 17:25:31 2017 INFO : Validating Calpha distances... Fri Nov 3 17:25:31 2017 INFO : Model 5 distances correct: True Fri Nov 3 17:26:35 2017 INFO : Finished modelling Fri Nov 3 17:26:35 2017 STATUS CHANGED : R -> P Fri Nov 3 17:26:35 2017 INFO : Checking topology... Fri Nov 3 18:18:32 2017 INFO : Knot matrices done... Fri Nov 3 18:23:29 2017 INFO : Some knots found! Fri Nov 3 18:23:33 2017 INFO : Some lassos found! Fri Nov 3 18:23:33 2017 INFO : Finishing... Fri Nov 3 18:23:34 2017 INFO : Job done Fri Nov 3 18:23:34 2017 STATUS CHANGED : P -> F Fri Nov 3 18:23:34 2017 STATUS CHANGED : F -> F |
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