| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 5231 | 419-776 | 776-786 | -- | -- | |||
| Lasso | L -1C | -- | -- | 106-159 | |||||
| Model 2 | Slipknot | S 5231 | 444-772 | 772-785 | -- | -- | |||
| Lasso | L -1C | -- | -- | 106-159 | |||||
| Model 3 | Slipknot | S 5251+31 | 423-776 | 776-786 | -- | -- | |||
| Lasso | L -1C | -- | -- | 106-159 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2DD8 |
S |
Unknot |
98.96% |
62.50% |
62.50% |
1.15 |
..Target: TFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLASTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 |
Sat Aug 5 17:45:43 2017 JOB CREATED : c4faf7e8-dd57-43b2-993d-1dbd6c222944 Sat Aug 5 17:46:01 2017 STATUS CHANGED : N -> R Sat Aug 5 17:46:01 2017 INFO : JOB STARTED AT: 2017-08-05 17:46:01.812223 Sat Aug 5 17:46:01 2017 INFO : METHOD: 2 Sat Aug 5 17:46:01 2017 INFO : Building Profile... Sat Aug 5 17:46:01 2017 INFO : --E-value set to 0.001-- Sat Aug 5 18:07:54 2017 INFO : Homologue pool found... Sat Aug 5 18:07:54 2017 INFO : Verifying structure sequences of homologues... Sat Aug 5 18:09:49 2017 INFO : Starting homologue filtering... Sat Aug 5 18:10:34 2017 INFO : Getting structures from PDB... Sat Aug 5 18:10:36 2017 INFO : Creating modelling alignment... Sat Aug 5 18:10:36 2017 INFO : Modelling... Sat Aug 5 19:06:52 2017 INFO : Model 1 built Sat Aug 5 19:06:52 2017 INFO : Validating Calpha distances... Sat Aug 5 19:06:52 2017 INFO : Model 1 distances correct: True Sat Aug 5 19:06:52 2017 INFO : Modelling... Sat Aug 5 20:50:36 2017 INFO : Model 2 built Sat Aug 5 20:50:36 2017 INFO : Validating Calpha distances... Sat Aug 5 20:50:36 2017 INFO : Model 2 distances correct: True Sat Aug 5 20:50:36 2017 INFO : Modelling... Sat Aug 5 22:38:11 2017 INFO : Model 3 built Sat Aug 5 22:38:11 2017 INFO : 1/4 gaps will be remodelled Sat Aug 5 23:20:01 2017 INFO : Validating Calpha distances... Sat Aug 5 23:20:01 2017 INFO : Model 3 distances correct: True Sat Aug 5 23:20:01 2017 INFO : Modelling... Sun Aug 6 01:12:58 2017 INFO : Model 4 built Sun Aug 6 01:12:58 2017 INFO : 1/4 gaps will be remodelled Sun Aug 6 01:49:22 2017 INFO : Validating Calpha distances... Sun Aug 6 01:49:22 2017 INFO : Model 4 distances correct: False Sun Aug 6 01:49:22 2017 INFO : Modelling... Sun Aug 6 03:27:47 2017 INFO : Model 5 built Sun Aug 6 03:27:47 2017 INFO : 1/4 gaps will be remodelled Sun Aug 6 04:07:54 2017 INFO : Validating Calpha distances... Sun Aug 6 04:07:54 2017 INFO : Model 5 distances correct: False Sun Aug 6 04:08:24 2017 INFO : Finished modelling Sun Aug 6 04:08:24 2017 STATUS CHANGED : R -> P Sun Aug 6 04:08:24 2017 INFO : Checking topology... Sun Aug 6 12:36:31 2017 INFO : Knot matrices done... Sun Aug 6 12:41:29 2017 INFO : Some knots found! Sun Aug 6 12:41:30 2017 INFO : Some lassos found! Sun Aug 6 12:41:30 2017 INFO : Finishing... Sun Aug 6 12:41:31 2017 INFO : Job done Sun Aug 6 12:41:31 2017 STATUS CHANGED : P -> F Sun Aug 6 12:41:31 2017 STATUS CHANGED : F -> F |
GapRepairer