Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
---|---|---|---|---|---|---|---|---|---|
range | loop range | loop | position | in JSmol | |||||
Model 1 | Knot | K 5231 | 5-220 | -- | -- | -- | |||
Lasso | SL 2--C | -- | -- | 22-95 | |||||
Model 2 | Knot | K 5231 | 5-220 | -- | -- | -- | |||
Lasso | SL 2--C | -- | -- | 22-95 | |||||
Model 3 | Knot | K 5231 | 5-220 | -- | -- | -- | |||
Lasso | SL 2--C | -- | -- | 22-95 | |||||
Model 4 | Knot | K 5231 | 5-220 | -- | -- | -- | |||
Lasso | SL 2--C | -- | -- | 22-95 | |||||
Model 5 | Knot | K 5231 | 4-220 | -- | -- | -- | |||
Lasso | SL 2--C | -- | -- | 22-95 | |||||
None |
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
4UEL |
A |
K -52,-31,-31 |
100.00% |
90.21% |
90.21% |
1.22 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
||||
4WLQ |
A |
K -52,-31,-31 |
97.26% |
68.53% |
59.44% |
1.00 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
||||
3IHR |
A |
K -52,-31,-31 |
97.16% |
45.45% |
36.36% |
1.04 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
||||
4IG7 |
A |
K -52,-31,-31 |
52.38% |
107.69% |
16.78% |
1.24 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
||||
3RIS |
A |
K -52,-31,-31 |
98.68% |
53.85% |
53.85% |
1.00 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
||||
3RII |
B |
K -52,-31,-31 |
96.73% |
61.54% |
61.54% |
1.01 |
..Target: GEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN |
PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | RQQMFEFDTKTSAKEEDAF |
|||
---|---|---|---|---|---|---|---|---|---|
4UEL | A | K -52,-31,-31 | 53.85% | 53.85% | RQQMFEFDT------EDAF |
||||
4WLQ | A | K -52,-31,-31 | 23.08% | 23.08% | RQQMFE-----------AF |
||||
3IHR | A | K -52,-31,-31 | 0.00% | 0.00% | -----------------AF |
||||
4IG7 | A | K -52,-31,-31 | 7.69% | 7.69% | ---------------EDVF |
||||
3RIS | A | K -52,-31,-31 | 53.85% | 53.85% | RQQMFEFDTK------DAF |
||||
3RII | B | K -52,-31,-31 | 61.54% | 61.54% | R-------TKTSAKEEDAF |
PDB code |
Chain | Knot type |
Gap coverage |
Gap identity |
>Target_Sequence: gap | QLAEEPMDTDQGNSMLS |
|||
---|---|---|---|---|---|---|---|---|---|
4UEL | A | K -52,-31,-31 | 36.36% | 36.36% | QLAEE-------NSMLS |
||||
4WLQ | A | K -52,-31,-31 | 36.36% | 45.45% | QLAEEPM------TVLS |
||||
3IHR | A | K -52,-31,-31 | 36.36% | 45.45% | QLAEEPXD------XLS |
||||
4IG7 | A | K -52,-31,-31 | 9.09% | 100.00% | --FAQAGDSAEVDRLVA |
||||
3RIS | A | K -52,-31,-31 | 0.00% | 0.00% | ----------------- |
||||
3RII | B | K -52,-31,-31 | 0.00% | 0.00% | ----------------- |
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:36:52 2017 JOB CREATED : ce899f52-ddd0-448d-bfe7-96233ae7647f Fri Dec 1 11:32:02 2017 STATUS CHANGED : N -> R Fri Dec 1 11:32:02 2017 INFO : JOB STARTED AT: 2017-12-01 11:32:02.744774 Fri Dec 1 11:32:02 2017 INFO : METHOD: 1 Fri Dec 1 11:32:02 2017 INFO : Precalculated profile found... Fri Dec 1 11:32:02 2017 INFO : Homologue pool found... Fri Dec 1 11:32:02 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 11:33:35 2017 INFO : Starting homologue filtering... Fri Dec 1 11:34:31 2017 INFO : Getting structures from PDB... Fri Dec 1 11:34:59 2017 INFO : Creating modelling alignment... Fri Dec 1 11:34:59 2017 INFO : Modelling... Fri Dec 1 11:42:02 2017 INFO : Model 1 built Fri Dec 1 11:42:02 2017 INFO : Validating Calpha distances... Fri Dec 1 11:42:02 2017 INFO : Model 1 distances correct: True Fri Dec 1 11:42:02 2017 INFO : Modelling... Fri Dec 1 11:57:56 2017 INFO : Model 2 built Fri Dec 1 11:57:56 2017 INFO : Validating Calpha distances... Fri Dec 1 11:57:56 2017 INFO : Model 2 distances correct: True Fri Dec 1 11:57:56 2017 INFO : Modelling... Fri Dec 1 12:05:41 2017 INFO : Model 3 built Fri Dec 1 12:05:41 2017 INFO : Validating Calpha distances... Fri Dec 1 12:05:41 2017 INFO : Model 3 distances correct: True Fri Dec 1 12:05:41 2017 INFO : Modelling... Fri Dec 1 12:18:31 2017 INFO : Model 4 built Fri Dec 1 12:18:31 2017 INFO : Validating Calpha distances... Fri Dec 1 12:18:31 2017 INFO : Model 4 distances correct: True Fri Dec 1 12:18:31 2017 INFO : Modelling... Fri Dec 1 12:25:31 2017 INFO : Model 5 built Fri Dec 1 12:25:31 2017 INFO : Validating Calpha distances... Fri Dec 1 12:25:31 2017 INFO : Model 5 distances correct: True Fri Dec 1 12:26:09 2017 INFO : Finished modelling Fri Dec 1 12:26:09 2017 STATUS CHANGED : R -> P Fri Dec 1 12:26:09 2017 INFO : Checking topology... Fri Dec 1 12:30:13 2017 INFO : Knot matrices done... Fri Dec 1 12:31:53 2017 INFO : Some knots found! Fri Dec 1 12:32:00 2017 INFO : Some lassos found! Fri Dec 1 12:32:00 2017 INFO : Finishing... Fri Dec 1 12:32:00 2017 STATUS CHANGED : P -> E Fri Dec 1 12:32:00 2017 ERROR : Error while finishing Fri Dec 1 12:32:00 2017 STATUS CHANGED : E -> F |