GapRepairer

Notice: All gaps were below 2 aa in length - they won't be described below.

Show only modeled chain

Models

Number of gaps:0

Gap lengths:

Model	Entanglement	Average
		DOPE-HR
Model 1	Unknot	-19681
Model 2	Unknot	-19702
Model 3	Unknot	-19678
Model 4	Unknot	-19696
Model 5	Unknot	-19693
Colour the base model according to the B-factor (lowest to highest)			Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Thu Apr 26 18:04:25 2018	JOB CREATED : d8835115-5bd5-491f-b2ca-1a735cf13c90
Thu Apr 26 18:05:02 2018	STATUS CHANGED : N -> R
Thu Apr 26 18:05:02 2018	INFO : JOB STARTED AT: 2018-04-26 18:05:02.497271
Thu Apr 26 18:05:02 2018	INFO : METHOD: 1
Thu Apr 26 18:05:02 2018	INFO : Building Profile...
Thu Apr 26 18:05:02 2018	INFO : --E-value set to 1.001--
Thu Apr 26 18:14:00 2018	INFO : Homologue pool found...
Thu Apr 26 18:14:00 2018	INFO : Verifying structure sequences of homologues...
Thu Apr 26 19:28:11 2018	INFO : Starting homologue filtering...
Thu Apr 26 19:28:39 2018	INFO : Getting structures from PDB...
Thu Apr 26 19:28:39 2018	INFO : Creating modelling alignment...
Thu Apr 26 19:28:39 2018	INFO : Adding other chains
Thu Apr 26 19:28:39 2018	INFO : Modelling...
Thu Apr 26 19:28:46 2018	INFO : Model 1 built
Thu Apr 26 19:28:46 2018	INFO : Validating Calpha distances...
Thu Apr 26 19:28:46 2018	INFO : Model 1 distances correct: True
Thu Apr 26 19:28:46 2018	INFO : Modelling...
Thu Apr 26 19:28:52 2018	INFO : Model 2 built
Thu Apr 26 19:28:52 2018	INFO : Validating Calpha distances...
Thu Apr 26 19:28:52 2018	INFO : Model 2 distances correct: True
Thu Apr 26 19:28:52 2018	INFO : Modelling...
Thu Apr 26 19:28:58 2018	INFO : Model 3 built
Thu Apr 26 19:28:58 2018	INFO : Validating Calpha distances...
Thu Apr 26 19:28:58 2018	INFO : Model 3 distances correct: True
Thu Apr 26 19:28:58 2018	INFO : Modelling...
Thu Apr 26 19:29:05 2018	INFO : Model 4 built
Thu Apr 26 19:29:05 2018	INFO : Validating Calpha distances...
Thu Apr 26 19:29:05 2018	INFO : Model 4 distances correct: True
Thu Apr 26 19:29:05 2018	INFO : Modelling...
Thu Apr 26 19:29:11 2018	INFO : Model 5 built
Thu Apr 26 19:29:11 2018	INFO : Validating Calpha distances...
Thu Apr 26 19:29:11 2018	INFO : Model 5 distances correct: True
Thu Apr 26 19:29:21 2018	INFO : Finished modelling
Thu Apr 26 19:29:21 2018	STATUS CHANGED : R -> P
Thu Apr 26 19:29:29 2018	INFO : Finished edm surfaces: success
Thu Apr 26 19:29:29 2018	INFO : Checking topology...
Thu Apr 26 19:29:43 2018	INFO : Knot matrices done...
Thu Apr 26 19:29:43 2018	INFO : No knots found...
Thu Apr 26 19:29:43 2018	INFO : No lassos found...
Thu Apr 26 19:29:43 2018	INFO : Finishing...
Thu Apr 26 19:29:44 2018	INFO : Job done
Thu Apr 26 19:29:44 2018	STATUS CHANGED : P -> F
Thu Apr 26 19:29:44 2018	STATUS CHANGED : F -> F

1DWR chain A