Job name:

1UAM chain A

da79cc90-c49f-48d9-9cfc-9262b7f2e8fb
Finished
Notice: All gaps were below 2 aa in length - they won't be described below.
Electron density map:

Differential EDM:
Models Number of gaps:0 Gap lengths:
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR
Model 1 Non-trivial -27783
Model 2 Non-trivial -27692
Model 3 Non-trivial -27768
Model 4 Non-trivial -27680
Model 5 Non-trivial -27758
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Knot K +31 86-133 -- -- --
Model 2 Knot K +31 86-133 -- -- --
Model 3 Knot K +31 86-133 -- -- --
Model 4 Knot K +31 86-133 -- -- --
Model 5 Knot K +31 86-133 -- -- --
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Sun Jul 23 14:54:28 2017	JOB CREATED : da79cc90-c49f-48d9-9cfc-9262b7f2e8fb
Sun Jul 23 14:55:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 14:55:02 2017	INFO : JOB STARTED AT: 2017-07-23 14:55:02.175757
Sun Jul 23 14:55:02 2017	INFO : METHOD: 1
Sun Jul 23 14:55:02 2017	INFO : Precalculated profile found...
Sun Jul 23 14:55:02 2017	INFO : Homologue pool found...
Sun Jul 23 14:55:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 14:55:38 2017	INFO : Starting homologue filtering...
Sun Jul 23 14:56:50 2017	INFO : Getting structures from PDB...
Sun Jul 23 14:56:50 2017	INFO : Creating modelling alignment...
Sun Jul 23 14:56:50 2017	INFO : Modelling...
Sun Jul 23 14:57:15 2017	INFO : Model 1 built
Sun Jul 23 14:57:15 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:57:15 2017	INFO : Model 1 distances correct: True
Sun Jul 23 14:57:15 2017	INFO : Modelling...
Sun Jul 23 14:57:39 2017	INFO : Model 2 built
Sun Jul 23 14:57:39 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:57:39 2017	INFO : Model 2 distances correct: True
Sun Jul 23 14:57:39 2017	INFO : Modelling...
Sun Jul 23 14:58:04 2017	INFO : Model 3 built
Sun Jul 23 14:58:04 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:58:04 2017	INFO : Model 3 distances correct: True
Sun Jul 23 14:58:04 2017	INFO : Modelling...
Sun Jul 23 14:58:26 2017	INFO : Model 4 built
Sun Jul 23 14:58:26 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:58:26 2017	INFO : Model 4 distances correct: True
Sun Jul 23 14:58:26 2017	INFO : Modelling...
Sun Jul 23 14:58:48 2017	INFO : Model 5 built
Sun Jul 23 14:58:48 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:58:48 2017	INFO : Model 5 distances correct: True
Sun Jul 23 14:59:10 2017	INFO : Finished modelling
Sun Jul 23 14:59:10 2017	STATUS CHANGED : R -> P
Sun Jul 23 14:59:10 2017	INFO : Checking topology...
Sun Jul 23 15:07:13 2017	INFO : Knot matrices done...
Sun Jul 23 15:11:18 2017	INFO : Some knots found!
Sun Jul 23 15:11:18 2017	INFO : No lassos found...
Sun Jul 23 15:11:18 2017	INFO : Finishing...
Sun Jul 23 15:11:18 2017	INFO : Job done
Sun Jul 23 15:11:18 2017	STATUS CHANGED : P -> F
Sun Jul 23 15:11:18 2017	STATUS CHANGED : F -> F

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