Job name:

4XUU chain C

db7a5fd6-650f-4a50-b93e-650229d0952b
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 6
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -16233
Model 2 Non-trivial -16203
Model 3 Non-trivial -16191
Model 4 Non-trivial -16134
Model 5 Non-trivial -16128
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Lasso L +1C -- -- 35-100
Model 2 Lasso L +1C -- -- 35-100
Model 3 Lasso L +1C -- -- 35-100
Model 4 Lasso L +1C -- -- 35-100
Model 5 Lasso L +1C -- -- 35-100
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Help
PDB
code		 Chain Entanglement
type		 Seq
identity		 Total gap
coverage		 Total gap
identity		 RMSD [Å] Pairwise alignment to the target: gap


4XUU
A
Unknot
100.00%
100.00%
100.00%
0.61

..Target: SRSHQELISQLLQSYXKLLLPDDEKFHGGWALIDCDPSLIDATHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEPTLFGKPKFSCXRLHYRYKEASGYFHTLRAVXRNPEEDGKDTLQCIAEXLQITKQAXGSDLPIIEKKLEAKASKPHEDII
Template: SRSHQELISQLLQSYXKLLLPDDEKFHGGWALIDCDPSLIDATHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLENLEKIEIGPEPTLFGKPKFSCXRLHYRYKEASGYFHTLRAVXRNPEEDGKDTLQCIAEXLQITKQAXGSDLPIIEKKLEAKASKPHEDII
Help
PDB
code		 Chain Knot
type		 Gap
coverage		 Gap
identity		 >Target_Sequence: gap

PSLIDATHRDVD
4XUU A Unknot 100.00% 100.00%

PSLIDATHRDVD

Models
Similarity profile
Modelling alignment

Wed Nov 29 11:37:05 2017	JOB CREATED : db7a5fd6-650f-4a50-b93e-650229d0952b
Wed Nov 29 11:38:02 2017	STATUS CHANGED : N -> R
Wed Nov 29 11:38:02 2017	INFO : JOB STARTED AT: 2017-11-29 11:38:02.430119
Wed Nov 29 11:38:02 2017	INFO : METHOD: 1
Wed Nov 29 11:38:02 2017	INFO : Precalculated profile found...
Wed Nov 29 11:38:02 2017	INFO : Homologue pool found...
Wed Nov 29 11:38:02 2017	INFO : Verifying structure sequences of homologues...
Wed Nov 29 11:38:12 2017	INFO : Starting homologue filtering...
Wed Nov 29 11:38:15 2017	INFO : Getting structures from PDB...
Wed Nov 29 11:38:18 2017	INFO : Creating modelling alignment...
Wed Nov 29 11:38:18 2017	INFO : Modelling...
Wed Nov 29 11:38:58 2017	INFO : Model 1 built
Wed Nov 29 11:38:58 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:38:58 2017	INFO : Model 1 distances correct: True
Wed Nov 29 11:38:58 2017	INFO : Modelling...
Wed Nov 29 11:39:36 2017	INFO : Model 2 built
Wed Nov 29 11:39:36 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:39:36 2017	INFO : Model 2 distances correct: True
Wed Nov 29 11:39:36 2017	INFO : Modelling...
Wed Nov 29 11:40:13 2017	INFO : Model 3 built
Wed Nov 29 11:40:13 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:40:13 2017	INFO : Model 3 distances correct: True
Wed Nov 29 11:40:13 2017	INFO : Modelling...
Wed Nov 29 11:40:51 2017	INFO : Model 4 built
Wed Nov 29 11:40:51 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:40:51 2017	INFO : Model 4 distances correct: True
Wed Nov 29 11:40:51 2017	INFO : Modelling...
Wed Nov 29 11:41:28 2017	INFO : Model 5 built
Wed Nov 29 11:41:28 2017	INFO : Validating Calpha distances...
Wed Nov 29 11:41:28 2017	INFO : Model 5 distances correct: True
Wed Nov 29 11:41:37 2017	INFO : Finished modelling
Wed Nov 29 11:41:37 2017	STATUS CHANGED : R -> P
Wed Nov 29 11:41:37 2017	INFO : Checking topology...
Wed Nov 29 11:41:53 2017	INFO : Knot matrices done...
Wed Nov 29 11:41:53 2017	INFO : No knots found...
Wed Nov 29 11:41:54 2017	INFO : Some lassos found!
Wed Nov 29 11:41:54 2017	INFO : Finishing...
Wed Nov 29 11:41:54 2017	STATUS CHANGED : P -> E
Wed Nov 29 11:41:54 2017	ERROR : Error while finishing
Wed Nov 29 11:41:54 2017	STATUS CHANGED : E -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling