| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S +31 | 88-152 | 152-352 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 2 | Slipknot | S +31 | 88-152 | 152-352 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 3 | Slipknot | S 31 | 88-152 | 152-352 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 4 | Slipknot | S 31 | 88-152 | 152-352 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 5 | Slipknot | S 31 | 88-152 | 152-352 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5GS6 |
A |
Unknot |
55.68% |
100.00% |
56.25% |
0.88 |
..Target: ADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKSILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sun Jul 23 14:54:52 2017 JOB CREATED : e116213b-7929-4371-8735-99ddf060934b Sun Jul 23 14:55:02 2017 STATUS CHANGED : N -> R Sun Jul 23 14:55:02 2017 INFO : JOB STARTED AT: 2017-07-23 14:55:02.131617 Sun Jul 23 14:55:02 2017 INFO : METHOD: 1 Sun Jul 23 14:55:02 2017 INFO : Precalculated profile found... Sun Jul 23 14:55:02 2017 INFO : Homologue pool found... Sun Jul 23 14:55:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 14:55:39 2017 INFO : Starting homologue filtering... Sun Jul 23 14:56:52 2017 INFO : Getting structures from PDB... Sun Jul 23 14:56:57 2017 INFO : Creating modelling alignment... Sun Jul 23 14:56:57 2017 INFO : Modelling... Sun Jul 23 15:00:24 2017 INFO : Model 1 built Sun Jul 23 15:00:24 2017 INFO : Validating Calpha distances... Sun Jul 23 15:00:24 2017 INFO : Model 1 distances correct: True Sun Jul 23 15:00:24 2017 INFO : Modelling... Sun Jul 23 15:03:48 2017 INFO : Model 2 built Sun Jul 23 15:03:48 2017 INFO : Validating Calpha distances... Sun Jul 23 15:03:48 2017 INFO : Model 2 distances correct: True Sun Jul 23 15:03:48 2017 INFO : Modelling... Sun Jul 23 15:07:27 2017 INFO : Model 3 built Sun Jul 23 15:07:27 2017 INFO : Validating Calpha distances... Sun Jul 23 15:07:27 2017 INFO : Model 3 distances correct: True Sun Jul 23 15:07:27 2017 INFO : Modelling... Sun Jul 23 15:11:03 2017 INFO : Model 4 built Sun Jul 23 15:11:03 2017 INFO : Validating Calpha distances... Sun Jul 23 15:11:03 2017 INFO : Model 4 distances correct: True Sun Jul 23 15:11:03 2017 INFO : Modelling... Sun Jul 23 15:15:01 2017 INFO : Model 5 built Sun Jul 23 15:15:01 2017 INFO : Validating Calpha distances... Sun Jul 23 15:15:01 2017 INFO : Model 5 distances correct: True Sun Jul 23 15:15:45 2017 INFO : Finished modelling Sun Jul 23 15:15:45 2017 STATUS CHANGED : R -> P Sun Jul 23 15:15:45 2017 INFO : Checking topology... Sun Jul 23 15:33:23 2017 INFO : Knot matrices done... Sun Jul 23 15:37:10 2017 INFO : Some knots found! Sun Jul 23 15:37:14 2017 INFO : Some lassos found! Sun Jul 23 15:37:14 2017 INFO : Finishing... Sun Jul 23 15:37:15 2017 INFO : Job done Sun Jul 23 15:37:15 2017 STATUS CHANGED : P -> F Sun Jul 23 15:37:15 2017 STATUS CHANGED : F -> F |
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