Job name:

4TPL chain A

eb7cacdf-1e0f-4d62-95a1-a0f1c735877b
Finished
Models Number of gaps:1 Gap lengths: 22
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -35662
Model 2 Non-trivial -35621
Model 3 Non-trivial -35573
Model 4 Non-trivial -35308
Model 5 Non-trivial -35226
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Warning: JSmol may at times display gaps where there are none - due to some overlaps in models. This does not indicate presence of gaps in downloaded structure!
EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Slipknot S +31 67-197 197-354 -- --
Lasso L -1C -- -- 291-340
Model 2 Lasso L +1C -- -- 66-154
Model 3 Slipknot S +31 69-175 175-362 -- --
Lasso L -1C -- -- 291-340
Model 4 Slipknot S 31 69-162 162-362 -- --
Lasso L -1C -- -- 291-340
Model 5 Slipknot S 31 66-242 242-249 -- --
Lasso L +1C -- -- 66-154
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 3
Model 4
Model 5
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Models
Similarity profile
Modelling alignment
Raw knot fingerprint matrices:
Model_1
Model_3
Model_4
Model_5

Sun Jul 23 14:56:07 2017	JOB CREATED : eb7cacdf-1e0f-4d62-95a1-a0f1c735877b
Sun Jul 23 17:05:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 17:05:02 2017	INFO : JOB STARTED AT: 2017-07-23 17:05:02.324328
Sun Jul 23 17:05:02 2017	INFO : METHOD: 1
Sun Jul 23 17:05:02 2017	INFO : Precalculated profile found...
Sun Jul 23 17:05:02 2017	INFO : Homologue pool found...
Sun Jul 23 17:05:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 17:05:31 2017	INFO : Starting homologue filtering...
Sun Jul 23 17:05:59 2017	INFO : Getting structures from PDB...
Sun Jul 23 17:06:00 2017	INFO : Creating modelling alignment...
Sun Jul 23 17:06:00 2017	INFO : Modelling...
Sun Jul 23 17:12:19 2017	INFO : Model 1 built
Sun Jul 23 17:12:19 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:12:19 2017	INFO : Model 1 distances correct: True
Sun Jul 23 17:12:19 2017	INFO : Modelling...
Sun Jul 23 17:18:40 2017	INFO : Model 2 built
Sun Jul 23 17:18:40 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:18:40 2017	INFO : Model 2 distances correct: True
Sun Jul 23 17:18:40 2017	INFO : Modelling...
Sun Jul 23 17:22:21 2017	INFO : Model 3 built
Sun Jul 23 17:22:21 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:22:21 2017	INFO : Model 3 distances correct: True
Sun Jul 23 17:22:21 2017	INFO : Modelling...
Sun Jul 23 17:26:13 2017	INFO : Model 4 built
Sun Jul 23 17:26:13 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:26:13 2017	INFO : Model 4 distances correct: True
Sun Jul 23 17:26:13 2017	INFO : Modelling...
Sun Jul 23 17:30:05 2017	INFO : Model 5 built
Sun Jul 23 17:30:05 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:30:05 2017	INFO : Model 5 distances correct: True
Sun Jul 23 17:30:38 2017	INFO : Finished modelling
Sun Jul 23 17:30:38 2017	STATUS CHANGED : R -> P
Sun Jul 23 17:30:38 2017	INFO : Checking topology...
Sun Jul 23 17:39:49 2017	INFO : Knot matrices done...
Sun Jul 23 17:41:34 2017	INFO : Some knots found!
Sun Jul 23 17:41:40 2017	INFO : Some lassos found!
Sun Jul 23 17:41:40 2017	INFO : Finishing...
Sun Jul 23 17:41:41 2017	INFO : Job done
Sun Jul 23 17:41:41 2017	STATUS CHANGED : P -> F
Sun Jul 23 17:41:41 2017	STATUS CHANGED : F -> F

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