Job name:

4TPL chain A

eb7cacdf-1e0f-4d62-95a1-a0f1c735877b
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 22
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -35662
Model 2 Non-trivial -35621
Model 3 Non-trivial -35573
Model 4 Non-trivial -35308
Model 5 Non-trivial -35226
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Slipknot S +31 67-197 197-354 -- --
Lasso L -1C -- -- 291-340
Model 2 Lasso L +1C -- -- 66-154
Model 3 Slipknot S +31 69-175 175-362 -- --
Lasso L -1C -- -- 291-340
Model 4 Slipknot S 31 69-162 162-362 -- --
Lasso L -1C -- -- 291-340
Model 5 Slipknot S 31 66-242 242-249 -- --
Lasso L +1C -- -- 66-154
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 3
Model 4
Model 5
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Models
Similarity profile
Modelling alignment
Raw knot fingerprint matrices:
Model_1
Model_3
Model_4
Model_5

Sun Jul 23 14:56:07 2017	JOB CREATED : eb7cacdf-1e0f-4d62-95a1-a0f1c735877b
Sun Jul 23 17:05:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 17:05:02 2017	INFO : JOB STARTED AT: 2017-07-23 17:05:02.324328
Sun Jul 23 17:05:02 2017	INFO : METHOD: 1
Sun Jul 23 17:05:02 2017	INFO : Precalculated profile found...
Sun Jul 23 17:05:02 2017	INFO : Homologue pool found...
Sun Jul 23 17:05:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 17:05:31 2017	INFO : Starting homologue filtering...
Sun Jul 23 17:05:59 2017	INFO : Getting structures from PDB...
Sun Jul 23 17:06:00 2017	INFO : Creating modelling alignment...
Sun Jul 23 17:06:00 2017	INFO : Modelling...
Sun Jul 23 17:12:19 2017	INFO : Model 1 built
Sun Jul 23 17:12:19 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:12:19 2017	INFO : Model 1 distances correct: True
Sun Jul 23 17:12:19 2017	INFO : Modelling...
Sun Jul 23 17:18:40 2017	INFO : Model 2 built
Sun Jul 23 17:18:40 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:18:40 2017	INFO : Model 2 distances correct: True
Sun Jul 23 17:18:40 2017	INFO : Modelling...
Sun Jul 23 17:22:21 2017	INFO : Model 3 built
Sun Jul 23 17:22:21 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:22:21 2017	INFO : Model 3 distances correct: True
Sun Jul 23 17:22:21 2017	INFO : Modelling...
Sun Jul 23 17:26:13 2017	INFO : Model 4 built
Sun Jul 23 17:26:13 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:26:13 2017	INFO : Model 4 distances correct: True
Sun Jul 23 17:26:13 2017	INFO : Modelling...
Sun Jul 23 17:30:05 2017	INFO : Model 5 built
Sun Jul 23 17:30:05 2017	INFO : Validating Calpha distances...
Sun Jul 23 17:30:05 2017	INFO : Model 5 distances correct: True
Sun Jul 23 17:30:38 2017	INFO : Finished modelling
Sun Jul 23 17:30:38 2017	STATUS CHANGED : R -> P
Sun Jul 23 17:30:38 2017	INFO : Checking topology...
Sun Jul 23 17:39:49 2017	INFO : Knot matrices done...
Sun Jul 23 17:41:34 2017	INFO : Some knots found!
Sun Jul 23 17:41:40 2017	INFO : Some lassos found!
Sun Jul 23 17:41:40 2017	INFO : Finishing...
Sun Jul 23 17:41:41 2017	INFO : Job done
Sun Jul 23 17:41:41 2017	STATUS CHANGED : P -> F
Sun Jul 23 17:41:41 2017	STATUS CHANGED : F -> F

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