| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 59-152 | 152-349 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 2 | Slipknot | S 31 | 59-152 | 152-349 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 3 | Slipknot | S 31 | 59-151 | 151-349 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 4 | Slipknot | S 31 | 59-151 | 151-349 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| Model 5 | Slipknot | S 31 | 59-151 | 151-349 | -- | -- | |||
| Lasso | L -1C | -- | -- | 281-330 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4O6B |
B |
S +31 |
100.00% |
175.00% |
175.00% |
0.62 |
..Target: ADSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLESEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSL |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:52:40 2017 JOB CREATED : f09a5058-0d67-4537-9e42-c090b28c82b2 Sat Dec 2 06:35:02 2017 STATUS CHANGED : N -> R Sat Dec 2 06:35:02 2017 INFO : JOB STARTED AT: 2017-12-02 06:35:02.165415 Sat Dec 2 06:35:02 2017 INFO : METHOD: 1 Sat Dec 2 06:35:02 2017 INFO : Building Profile... Sat Dec 2 06:35:02 2017 INFO : --E-value set to 0.001-- Sat Dec 2 06:48:05 2017 INFO : Homologue pool found... Sat Dec 2 06:48:05 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 06:49:22 2017 INFO : Starting homologue filtering... Sat Dec 2 06:50:09 2017 INFO : Getting structures from PDB... Sat Dec 2 06:50:18 2017 INFO : Creating modelling alignment... Sat Dec 2 06:50:18 2017 INFO : Modelling... Sat Dec 2 07:20:20 2017 INFO : Model 1 built Sat Dec 2 07:20:20 2017 INFO : Validating Calpha distances... Sat Dec 2 07:20:20 2017 INFO : Model 1 distances correct: True Sat Dec 2 07:20:20 2017 INFO : Modelling... Sat Dec 2 07:41:10 2017 INFO : Model 2 built Sat Dec 2 07:41:10 2017 INFO : Validating Calpha distances... Sat Dec 2 07:41:10 2017 INFO : Model 2 distances correct: True Sat Dec 2 07:41:10 2017 INFO : Modelling... Sat Dec 2 07:51:15 2017 INFO : Model 3 built Sat Dec 2 07:51:15 2017 INFO : Validating Calpha distances... Sat Dec 2 07:51:15 2017 INFO : Model 3 distances correct: True Sat Dec 2 07:51:15 2017 INFO : Modelling... Sat Dec 2 08:04:41 2017 INFO : Model 4 built Sat Dec 2 08:04:41 2017 INFO : Validating Calpha distances... Sat Dec 2 08:04:41 2017 INFO : Model 4 distances correct: True Sat Dec 2 08:04:41 2017 INFO : Modelling... Sat Dec 2 08:17:40 2017 INFO : Model 5 built Sat Dec 2 08:17:40 2017 INFO : Validating Calpha distances... Sat Dec 2 08:17:40 2017 INFO : Model 5 distances correct: True Sat Dec 2 08:18:06 2017 INFO : Finished modelling Sat Dec 2 08:18:06 2017 STATUS CHANGED : R -> P Sat Dec 2 08:18:06 2017 INFO : Checking topology... Sat Dec 2 08:19:46 2017 INFO : Knot matrices done... Sat Dec 2 08:20:42 2017 INFO : Some knots found! Sat Dec 2 08:20:45 2017 INFO : Some lassos found! Sat Dec 2 08:20:45 2017 INFO : Finishing... Sat Dec 2 08:20:45 2017 STATUS CHANGED : P -> E Sat Dec 2 08:20:45 2017 ERROR : Error while finishing Sat Dec 2 08:20:45 2017 STATUS CHANGED : E -> F |
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