GapRepairer

Notice: All gaps were below 2 aa in length - they won't be described below.

Models

Number of gaps:0

Gap lengths:

Model	Entanglement	Average
		DOPE-HR
Model 1	Unknot	-4722
Model 2	Unknot	-4742
Model 3	Unknot	-4727
Model 4	Unknot	-4750
Model 5	Unknot	-4739
Colour the base model according to the B-factor (lowest to highest)			Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Thu Apr 26 17:52:42 2018	JOB CREATED : ff192b21-d61f-407d-8c80-5d46927c2604
Thu Apr 26 17:53:02 2018	STATUS CHANGED : N -> R
Thu Apr 26 17:53:02 2018	INFO : JOB STARTED AT: 2018-04-26 17:53:02.100118
Thu Apr 26 17:53:02 2018	INFO : METHOD: 1
Thu Apr 26 17:53:02 2018	INFO : Building Profile...
Thu Apr 26 17:53:02 2018	INFO : --E-value set to 0.001--
Thu Apr 26 17:55:18 2018	INFO : Homologue pool found...
Thu Apr 26 17:55:18 2018	INFO : Verifying structure sequences of homologues...
Thu Apr 26 17:56:16 2018	INFO : Starting homologue filtering...
Thu Apr 26 17:56:42 2018	INFO : Getting structures from PDB...
Thu Apr 26 17:56:43 2018	INFO : Creating modelling alignment...
Thu Apr 26 17:56:43 2018	INFO : Modelling...
Thu Apr 26 17:56:46 2018	INFO : Model 1 built
Thu Apr 26 17:56:46 2018	INFO : Validating Calpha distances...
Thu Apr 26 17:56:46 2018	INFO : Model 1 distances correct: True
Thu Apr 26 17:56:46 2018	INFO : Modelling...
Thu Apr 26 17:56:48 2018	INFO : Model 2 built
Thu Apr 26 17:56:48 2018	INFO : Validating Calpha distances...
Thu Apr 26 17:56:48 2018	INFO : Model 2 distances correct: True
Thu Apr 26 17:56:48 2018	INFO : Modelling...
Thu Apr 26 17:56:50 2018	INFO : Model 3 built
Thu Apr 26 17:56:50 2018	INFO : Validating Calpha distances...
Thu Apr 26 17:56:50 2018	INFO : Model 3 distances correct: True
Thu Apr 26 17:56:50 2018	INFO : Modelling...
Thu Apr 26 17:56:52 2018	INFO : Model 4 built
Thu Apr 26 17:56:52 2018	INFO : Validating Calpha distances...
Thu Apr 26 17:56:52 2018	INFO : Model 4 distances correct: True
Thu Apr 26 17:56:52 2018	INFO : Modelling...
Thu Apr 26 17:56:54 2018	INFO : Model 5 built
Thu Apr 26 17:56:54 2018	INFO : Validating Calpha distances...
Thu Apr 26 17:56:54 2018	INFO : Model 5 distances correct: True
Thu Apr 26 17:56:57 2018	INFO : Finished modelling
Thu Apr 26 17:56:57 2018	STATUS CHANGED : R -> P
Thu Apr 26 17:56:59 2018	INFO : Finished edm surfaces: no map
Thu Apr 26 17:56:59 2018	INFO : Checking topology...
Thu Apr 26 17:57:08 2018	INFO : Knot matrices done...
Thu Apr 26 17:57:08 2018	INFO : No knots found...
Thu Apr 26 17:57:08 2018	INFO : No lassos found...
Thu Apr 26 17:57:08 2018	INFO : Finishing...
Thu Apr 26 17:57:08 2018	INFO : Job done
Thu Apr 26 17:57:08 2018	STATUS CHANGED : P -> F
Thu Apr 26 17:57:08 2018	STATUS CHANGED : F -> F

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