Job name:

noname(1CMX chain A)

42016f05-fde1-45e4-8747-d83eddcfa88b
Finished
Warning: Knot detection did not finish.
Models Number of gaps:1 Gap lengths: 16
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Err -26370
Model 2 Err -26359
Model 3 Err -26196
Model 4 Err -26120
Model 5 Unknot -25955
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Warning: JSmol may at times display gaps where there are none - due to some overlaps in models. This does not indicate presence of gaps in downloaded structure!
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
PDB
code
Chain Entanglement
type
Seq
identity
Total gap
coverage
Total gap
identity
RMSD [Å] Pairwise alignment to the target: gap


1UCH

A

K -52,-31,-31

36.89%

87.50%

37.50%

1.21

..Target: RAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPI----------NEDRKSSTSQQITSSYDVIWFKQSVKNACGLYAILHSLSNNQSLL--EPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATA-----------DTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYMENANEEDVLNFAMLGLGPN
Template: R-WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGM-DPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSS--VYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFL--------------------------EESV-------SMSPEERARYLENYDAIRVD--LHFIALVHVDGHLYELDGR---KPFPINHGE-TSDETLLEDAIEV-CKKFME--RDPDELRFNAIALSAA


4DM9

A

K -52,-31,-31

29.15%

100.00%

12.50%

1.26

..Target: RAVVPIESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLFPINEDRKSSTSQQI--TSSYDV---IWF-KQSVKNACGLYAILHSLSNNQSLL--EPGSDLDNFLKSQSDTSSSKNRFDDVTTDQFVLNVIKENVQTFSTGQSEAPEATADTNL--HYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDLIEQELVRVRVASYME-NANEEDVLNFAMLGL-GPN
Template: MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGL-EEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFL-SETEKMSPEDR-----AKCFEKN---EAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGR-MPFPVNHGAS-------SEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA

PDB
code
Chain Knot
type
Gap
coverage
Gap
identity
>Target_Sequence: gap

PI----------NEDRKSSTSQQITSSYDVIW

1UCH A K -52,-31,-31 37.50% 87.50%

PITEKYEVFRTEEEEKIKSQGQDVTSS--VYF

4DM9 A K -52,-31,-31 12.50% 100.00%

PLTAQHENFRKKQIEELKGQEVSPKVY


Mon Sep 11 11:28:03 2017	JOB CREATED : 42016f05-fde1-45e4-8747-d83eddcfa88b
Mon Sep 11 11:29:01 2017	STATUS CHANGED : N -> R
Mon Sep 11 11:29:01 2017	INFO : JOB STARTED AT: 2017-09-11 11:29:01.516134
Mon Sep 11 11:29:01 2017	INFO : METHOD: 1
Mon Sep 11 11:29:01 2017	INFO : Precalculated profile found...
Mon Sep 11 11:29:01 2017	INFO : Homologue pool found...
Mon Sep 11 11:29:01 2017	INFO : Verifying structure sequences of homologues...
Mon Sep 11 11:29:47 2017	INFO : Starting homologue filtering...
Mon Sep 11 11:30:33 2017	INFO : Getting structures from PDB...
Mon Sep 11 11:30:38 2017	INFO : Creating modelling alignment...
Mon Sep 11 11:30:38 2017	INFO : Modelling...
Mon Sep 11 11:32:49 2017	INFO : Model 1 built
Mon Sep 11 11:32:49 2017	INFO : Validating Calpha distances...
Mon Sep 11 11:32:49 2017	INFO : Model 1 distances correct: True
Mon Sep 11 11:32:49 2017	INFO : Modelling...
Mon Sep 11 11:34:36 2017	INFO : Model 2 built
Mon Sep 11 11:34:36 2017	INFO : Validating Calpha distances...
Mon Sep 11 11:34:36 2017	INFO : Model 2 distances correct: True
Mon Sep 11 11:34:36 2017	INFO : Modelling...
Mon Sep 11 11:36:27 2017	INFO : Model 3 built
Mon Sep 11 11:36:27 2017	INFO : Validating Calpha distances...
Mon Sep 11 11:36:27 2017	INFO : Model 3 distances correct: True
Mon Sep 11 11:36:27 2017	INFO : Modelling...
Mon Sep 11 11:39:15 2017	INFO : Model 4 built
Mon Sep 11 11:39:15 2017	INFO : Validating Calpha distances...
Mon Sep 11 11:39:15 2017	INFO : Model 4 distances correct: True
Mon Sep 11 11:39:15 2017	INFO : Modelling...
Mon Sep 11 11:41:05 2017	INFO : Model 5 built
Mon Sep 11 11:41:05 2017	INFO : Validating Calpha distances...
Mon Sep 11 11:41:05 2017	INFO : Model 5 distances correct: True
Mon Sep 11 11:41:23 2017	INFO : Finished modelling
Mon Sep 11 11:41:23 2017	STATUS CHANGED : R -> P
Mon Sep 11 11:41:23 2017	INFO : Checking topology...
Mon Sep 11 11:41:24 2017	INFO : Knot matrices done...
Mon Sep 11 11:41:24 2017	INFO : No knots found...
Mon Sep 11 11:41:24 2017	INFO : No lassos found...
Mon Sep 11 11:41:24 2017	INFO : Finishing...
Mon Sep 11 11:41:24 2017	INFO : Job done
Mon Sep 11 11:41:24 2017	STATUS CHANGED : P -> F
Mon Sep 11 11:41:24 2017	STATUS CHANGED : F -> F

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