Job name:

noname(1YBW chain A)

889cd150-0dd5-40ca-b22a-cb93aa61b36f
Finished
Models Number of gaps:1 Gap lengths: 8
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Unknot -22216
Model 2 Unknot -22074
Model 3 Unknot -20991
Model 4 Unknot -20988
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Sun Jul 23 14:58:35 2017	JOB CREATED : 889cd150-0dd5-40ca-b22a-cb93aa61b36f
Sun Jul 23 20:49:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 20:49:02 2017	INFO : JOB STARTED AT: 2017-07-23 20:49:02.100977
Sun Jul 23 20:49:02 2017	INFO : METHOD: 1
Sun Jul 23 20:49:02 2017	INFO : Precalculated profile found...
Sun Jul 23 20:49:02 2017	INFO : Homologue pool found...
Sun Jul 23 20:49:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 21:40:04 2017	INFO : Starting homologue filtering...
Sun Jul 23 21:40:44 2017	INFO : Getting structures from PDB...
Sun Jul 23 21:40:44 2017	INFO : Creating modelling alignment...
Sun Jul 23 21:40:44 2017	INFO : Modelling...
Sun Jul 23 21:45:02 2017	INFO : Model 1 built
Sun Jul 23 21:45:02 2017	INFO : 1 gaps will be remodelled
Sun Jul 23 21:49:31 2017	INFO : Validating Calpha distances...
Sun Jul 23 21:49:31 2017	INFO : Model 1 distances correct: True
Sun Jul 23 21:49:31 2017	INFO : Modelling...
Sun Jul 23 21:55:01 2017	INFO : Model 2 built
Sun Jul 23 21:55:01 2017	INFO : 1 gaps will be remodelled
Sun Jul 23 22:00:07 2017	INFO : Validating Calpha distances...
Sun Jul 23 22:00:07 2017	INFO : Model 2 distances correct: True
Sun Jul 23 22:00:07 2017	INFO : Modelling...
Sun Jul 23 22:04:23 2017	INFO : Model 3 built
Sun Jul 23 22:04:23 2017	INFO : 1 gaps will be remodelled
Sun Jul 23 22:09:04 2017	INFO : Validating Calpha distances...
Sun Jul 23 22:09:04 2017	INFO : Model 3 distances correct: True
Sun Jul 23 22:09:04 2017	INFO : Modelling...
Sun Jul 23 22:14:30 2017	INFO : Model 4 built
Sun Jul 23 22:14:30 2017	INFO : 1 gaps will be remodelled
Sun Jul 23 22:19:48 2017	INFO : Validating Calpha distances...
Sun Jul 23 22:19:48 2017	INFO : Model 4 distances correct: True
Sun Jul 23 22:19:48 2017	INFO : Modelling...
Sun Jul 23 22:25:38 2017	INFO : Model 5 built
Sun Jul 23 22:25:38 2017	INFO : 1 gaps will be remodelled
Sun Jul 23 22:30:47 2017	INFO : Validating Calpha distances...
Sun Jul 23 22:30:47 2017	INFO : Model 5 distances correct: False
Sun Jul 23 22:31:03 2017	INFO : Finished modelling
Sun Jul 23 22:31:03 2017	STATUS CHANGED : R -> P
Sun Jul 23 22:31:03 2017	INFO : Checking topology...
Sun Jul 23 22:34:36 2017	INFO : Knot matrices done...
Sun Jul 23 22:34:36 2017	INFO : No knots found...
Sun Jul 23 22:34:39 2017	INFO : No lassos found...
Sun Jul 23 22:34:39 2017	INFO : Finishing...
Sun Jul 23 22:34:39 2017	INFO : Job done
Sun Jul 23 22:34:39 2017	STATUS CHANGED : P -> F
Sun Jul 23 22:34:39 2017	STATUS CHANGED : F -> F

GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling