Job name:

noname(1AX8 chain A)

c5768069-75ce-466a-a230-be6f16427168
Finished
Models Number of gaps:1 Gap lengths: 15
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -17573
Model 2 Non-trivial -17411
Model 3 Non-trivial -17327
Model 4 Non-trivial -17283
Model 5 Non-trivial -17277
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Warning: JSmol may at times display gaps where there are none - due to some overlaps in models. This does not indicate presence of gaps in downloaded structure!
EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Lasso L +1N -- -- 94-144 +55
Model 2 Lasso L +1N -- -- 94-144 +55
Model 3 Lasso L +1N -- -- 94-144 +55
Model 4 Lasso L +1N -- -- 94-144 +55
Model 5 Lasso L +1N -- -- 94-144 +55
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Sun Aug  6 20:57:46 2017	JOB CREATED : c5768069-75ce-466a-a230-be6f16427168
Sun Aug  6 20:58:02 2017	STATUS CHANGED : N -> R
Sun Aug  6 20:58:03 2017	INFO : JOB STARTED AT: 2017-08-06 20:58:03.159707
Sun Aug  6 20:58:03 2017	INFO : METHOD: 1
Sun Aug  6 20:58:03 2017	INFO : Precalculated profile found...
Sun Aug  6 20:58:03 2017	INFO : Homologue pool found...
Sun Aug  6 20:58:03 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Sun Aug  6 20:58:03 2017	INFO : Proceeding using de novo modelling
Sun Aug  6 20:58:03 2017	INFO : Verifying structure sequences of homologues...
Sun Aug  6 20:58:03 2017	INFO : Getting structures from PDB...
Sun Aug  6 20:58:03 2017	INFO : Creating modelling alignment...
Sun Aug  6 20:58:03 2017	INFO : Modelling...
Sun Aug  6 20:58:47 2017	INFO : Model 1 built
Sun Aug  6 20:58:47 2017	INFO : Validating Calpha distances...
Sun Aug  6 20:58:47 2017	INFO : Model 1 distances correct: True
Sun Aug  6 20:58:47 2017	INFO : Modelling...
Sun Aug  6 20:59:31 2017	INFO : Model 2 built
Sun Aug  6 20:59:31 2017	INFO : Validating Calpha distances...
Sun Aug  6 20:59:31 2017	INFO : Model 2 distances correct: True
Sun Aug  6 20:59:31 2017	INFO : Modelling...
Sun Aug  6 21:00:14 2017	INFO : Model 3 built
Sun Aug  6 21:00:14 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:00:14 2017	INFO : Model 3 distances correct: True
Sun Aug  6 21:00:14 2017	INFO : Modelling...
Sun Aug  6 21:00:57 2017	INFO : Model 4 built
Sun Aug  6 21:00:57 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:00:57 2017	INFO : Model 4 distances correct: True
Sun Aug  6 21:00:57 2017	INFO : Modelling...
Sun Aug  6 21:01:40 2017	INFO : Model 5 built
Sun Aug  6 21:01:40 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:01:40 2017	INFO : Model 5 distances correct: True
Sun Aug  6 21:01:47 2017	INFO : Finished modelling
Sun Aug  6 21:01:47 2017	STATUS CHANGED : R -> P
Sun Aug  6 21:01:48 2017	INFO : Checking topology...
Sun Aug  6 21:03:01 2017	INFO : Knot matrices done...
Sun Aug  6 21:03:01 2017	INFO : No knots found...
Sun Aug  6 21:03:02 2017	INFO : Some lassos found!
Sun Aug  6 21:03:03 2017	INFO : Finishing...
Sun Aug  6 21:03:03 2017	INFO : Job done
Sun Aug  6 21:03:03 2017	STATUS CHANGED : P -> F
Sun Aug  6 21:03:03 2017	STATUS CHANGED : F -> F

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