Job name:

noname(1AX8 chain A)

c5768069-75ce-466a-a230-be6f16427168
Finished
Models Number of gaps:1 Gap lengths: 15
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Non-trivial -17573
Model 2 Non-trivial -17411
Model 3 Non-trivial -17327
Model 4 Non-trivial -17283
Model 5 Non-trivial -17277
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

EntanglementHelpKnotProtLassoProtLinkProt
Model Type Knot core Slipknot Lasso Piercing Show
range loop range loop position in JSmol
Model 1 Lasso L +1N -- -- 94-144 +55
Model 2 Lasso L +1N -- -- 94-144 +55
Model 3 Lasso L +1N -- -- 94-144 +55
Model 4 Lasso L +1N -- -- 94-144 +55
Model 5 Lasso L +1N -- -- 94-144 +55
None
Topologies marked by an OK sign () are in accordance with the template topology.
Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.
Model 1
Model 2
Model 3
Model 4
Model 5
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Sun Aug  6 20:57:46 2017	JOB CREATED : c5768069-75ce-466a-a230-be6f16427168
Sun Aug  6 20:58:02 2017	STATUS CHANGED : N -> R
Sun Aug  6 20:58:03 2017	INFO : JOB STARTED AT: 2017-08-06 20:58:03.159707
Sun Aug  6 20:58:03 2017	INFO : METHOD: 1
Sun Aug  6 20:58:03 2017	INFO : Precalculated profile found...
Sun Aug  6 20:58:03 2017	INFO : Homologue pool found...
Sun Aug  6 20:58:03 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Sun Aug  6 20:58:03 2017	INFO : Proceeding using de novo modelling
Sun Aug  6 20:58:03 2017	INFO : Verifying structure sequences of homologues...
Sun Aug  6 20:58:03 2017	INFO : Getting structures from PDB...
Sun Aug  6 20:58:03 2017	INFO : Creating modelling alignment...
Sun Aug  6 20:58:03 2017	INFO : Modelling...
Sun Aug  6 20:58:47 2017	INFO : Model 1 built
Sun Aug  6 20:58:47 2017	INFO : Validating Calpha distances...
Sun Aug  6 20:58:47 2017	INFO : Model 1 distances correct: True
Sun Aug  6 20:58:47 2017	INFO : Modelling...
Sun Aug  6 20:59:31 2017	INFO : Model 2 built
Sun Aug  6 20:59:31 2017	INFO : Validating Calpha distances...
Sun Aug  6 20:59:31 2017	INFO : Model 2 distances correct: True
Sun Aug  6 20:59:31 2017	INFO : Modelling...
Sun Aug  6 21:00:14 2017	INFO : Model 3 built
Sun Aug  6 21:00:14 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:00:14 2017	INFO : Model 3 distances correct: True
Sun Aug  6 21:00:14 2017	INFO : Modelling...
Sun Aug  6 21:00:57 2017	INFO : Model 4 built
Sun Aug  6 21:00:57 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:00:57 2017	INFO : Model 4 distances correct: True
Sun Aug  6 21:00:57 2017	INFO : Modelling...
Sun Aug  6 21:01:40 2017	INFO : Model 5 built
Sun Aug  6 21:01:40 2017	INFO : Validating Calpha distances...
Sun Aug  6 21:01:40 2017	INFO : Model 5 distances correct: True
Sun Aug  6 21:01:47 2017	INFO : Finished modelling
Sun Aug  6 21:01:47 2017	STATUS CHANGED : R -> P
Sun Aug  6 21:01:48 2017	INFO : Checking topology...
Sun Aug  6 21:03:01 2017	INFO : Knot matrices done...
Sun Aug  6 21:03:01 2017	INFO : No knots found...
Sun Aug  6 21:03:02 2017	INFO : Some lassos found!
Sun Aug  6 21:03:03 2017	INFO : Finishing...
Sun Aug  6 21:03:03 2017	INFO : Job done
Sun Aug  6 21:03:03 2017	STATUS CHANGED : P -> F
Sun Aug  6 21:03:03 2017	STATUS CHANGED : F -> F

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