Job name:

2OVM chain A

0207e5ee-6e39-4f6d-99cb-99dc45345bd7
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 9
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Unknot -33002
Model 2 Unknot -32789
Model 3 Unknot -32756
Model 4 Unknot -32900
Model 5 Unknot -32718
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Help
PDB
code		 Chain Entanglement
type		 Seq
identity		 Total gap
coverage		 Total gap
identity		 RMSD [Å] Pairwise alignment to the target: gap


1A28
A
Unknot
100.00%
100.00%
100.00%
0.77

..Target: QLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHK
Template: QLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAAQLPKILAGMVKPLLFHK
Help
PDB
code		 Chain Knot
type		 Gap
coverage		 Gap
identity		 >Target_Sequence: gap

SRALSVEFPEMMSEV
1A28 A Unknot 100.00% 100.00%

SRALSVEFPEMMSEV

Models
Similarity profile
Modelling alignment

Thu Jan 30 19:27:44 2020	JOB CREATED : 0207e5ee-6e39-4f6d-99cb-99dc45345bd7
Thu Jan 30 19:28:02 2020	STATUS CHANGED : N -> R
Thu Jan 30 19:28:02 2020	INFO : JOB STARTED AT: 2020-01-30 19:28:02.254552
Thu Jan 30 19:28:02 2020	INFO : METHOD: 2
Thu Jan 30 19:28:02 2020	INFO : Building Profile...
Thu Jan 30 19:28:02 2020	INFO : --E-value set to 2.0--
Thu Jan 30 19:38:41 2020	INFO : Homologue pool found...
Thu Jan 30 19:38:41 2020	INFO : Verifying structure sequences of homologues...
Thu Jan 30 20:33:36 2020	INFO : Starting homologue filtering...
Thu Jan 30 20:33:59 2020	INFO : Getting structures from PDB...
Thu Jan 30 20:34:03 2020	INFO : Creating modelling alignment...
Thu Jan 30 20:34:03 2020	INFO : Modelling...
Thu Jan 30 20:35:17 2020	INFO : Model 1 built
Thu Jan 30 20:35:17 2020	INFO : Validating Calpha distances...
Thu Jan 30 20:35:17 2020	INFO : Model 1 distances correct: True
Thu Jan 30 20:35:17 2020	INFO : Modelling...
Thu Jan 30 20:36:31 2020	INFO : Model 2 built
Thu Jan 30 20:36:31 2020	INFO : Validating Calpha distances...
Thu Jan 30 20:36:31 2020	INFO : Model 2 distances correct: True
Thu Jan 30 20:36:31 2020	INFO : Modelling...
Thu Jan 30 20:38:33 2020	INFO : Model 3 built
Thu Jan 30 20:38:33 2020	INFO : Validating Calpha distances...
Thu Jan 30 20:38:33 2020	INFO : Model 3 distances correct: True
Thu Jan 30 20:38:33 2020	INFO : Modelling...
Thu Jan 30 20:39:46 2020	INFO : Model 4 built
Thu Jan 30 20:39:46 2020	INFO : Validating Calpha distances...
Thu Jan 30 20:39:46 2020	INFO : Model 4 distances correct: True
Thu Jan 30 20:39:46 2020	INFO : Modelling...
Thu Jan 30 20:40:59 2020	INFO : Model 5 built
Thu Jan 30 20:40:59 2020	INFO : Validating Calpha distances...
Thu Jan 30 20:40:59 2020	INFO : Model 5 distances correct: True
Thu Jan 30 20:41:15 2020	INFO : Finished modelling
Thu Jan 30 20:41:15 2020	STATUS CHANGED : R -> P
Thu Jan 30 20:41:26 2020	INFO : Finished edm surfaces: success
Thu Jan 30 20:41:26 2020	INFO : Checking topology...
Thu Jan 30 20:41:51 2020	INFO : Knot matrices done...
Thu Jan 30 20:41:51 2020	INFO : No knots found...
Thu Jan 30 20:41:51 2020	INFO : No lassos found...
Thu Jan 30 20:41:51 2020	INFO : Finishing...
Thu Jan 30 20:41:51 2020	INFO : Job done
Thu Jan 30 20:41:51 2020	STATUS CHANGED : P -> F
Thu Jan 30 20:41:51 2020	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling