| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4LLD |
A |
Unknot |
98.99% |
100.00% |
100.00% |
0.61 |
..Target: EVQLVESGGGLVQPGGSLRLSCAASGFTFSDSWIHWVRQAPGKGLEWVAWISPYGGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARRHWPGGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP- |
||||
Wed Feb 19 20:16:55 2020 JOB CREATED : 0556161b-8bc9-45df-8823-fbe26292ed87 Wed Feb 19 20:17:02 2020 STATUS CHANGED : N -> R Wed Feb 19 20:17:02 2020 INFO : JOB STARTED AT: 2020-02-19 20:17:02.089162 Wed Feb 19 20:17:02 2020 INFO : METHOD: 1 Wed Feb 19 20:17:02 2020 INFO : Building Profile... Wed Feb 19 20:17:02 2020 INFO : --E-value set to 1.0-- Wed Feb 19 20:31:21 2020 INFO : Homologue pool found... Wed Feb 19 20:31:21 2020 INFO : Verifying structure sequences of homologues... Thu Feb 20 01:58:11 2020 INFO : Starting homologue filtering... Thu Feb 20 01:58:33 2020 INFO : Getting structures from PDB... Thu Feb 20 01:58:35 2020 INFO : Creating modelling alignment... Thu Feb 20 01:58:35 2020 INFO : Modelling... Thu Feb 20 01:59:25 2020 INFO : Model 1 built Thu Feb 20 01:59:25 2020 INFO : Validating Calpha distances... Thu Feb 20 01:59:25 2020 INFO : Model 1 distances correct: True Thu Feb 20 01:59:25 2020 INFO : Modelling... Thu Feb 20 02:00:11 2020 INFO : Model 2 built Thu Feb 20 02:00:11 2020 INFO : Validating Calpha distances... Thu Feb 20 02:00:11 2020 INFO : Model 2 distances correct: True Thu Feb 20 02:00:11 2020 INFO : Modelling... Thu Feb 20 02:00:58 2020 INFO : Model 3 built Thu Feb 20 02:00:58 2020 INFO : Validating Calpha distances... Thu Feb 20 02:00:58 2020 INFO : Model 3 distances correct: True Thu Feb 20 02:00:58 2020 INFO : Modelling... Thu Feb 20 02:01:46 2020 INFO : Model 4 built Thu Feb 20 02:01:46 2020 INFO : Validating Calpha distances... Thu Feb 20 02:01:46 2020 INFO : Model 4 distances correct: True Thu Feb 20 02:01:46 2020 INFO : Modelling... Thu Feb 20 02:02:34 2020 INFO : Model 5 built Thu Feb 20 02:02:34 2020 INFO : Validating Calpha distances... Thu Feb 20 02:02:34 2020 INFO : Model 5 distances correct: True Thu Feb 20 02:02:48 2020 INFO : Finished modelling Thu Feb 20 02:02:48 2020 STATUS CHANGED : R -> P Thu Feb 20 02:03:03 2020 INFO : Finished edm surfaces: success Thu Feb 20 02:03:03 2020 INFO : Checking topology... Thu Feb 20 02:03:25 2020 INFO : Knot matrices done... Thu Feb 20 02:03:25 2020 INFO : No knots found... Thu Feb 20 02:03:26 2020 INFO : No lassos found... Thu Feb 20 02:03:26 2020 INFO : Finishing... Thu Feb 20 02:03:26 2020 INFO : Job done Thu Feb 20 02:03:26 2020 STATUS CHANGED : P -> F Thu Feb 20 02:03:26 2020 STATUS CHANGED : F -> F |
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