| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4ZEM |
A |
Unknot |
30.49% |
81.48% |
25.93% |
1.62 |
..Target: -----------GSELSERIESFVETLKRGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMELIRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDESDQQESLHKLLTSGGLNE-DFSFHYAQLQSNIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQGHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEGDILEKVSVHCP-VFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPDD----HVL |
||||
5B04 |
C |
Unknot |
42.69% |
74.07% |
22.22% |
1.41 |
..Target: G--SELSERI---------ESFVETLK--RGGGPRSSEEMARETLGLLRQIITDHRWSNAGELMELIRREGRRMTAAQPSETTVGNMVRRVLKIIREEYGRLHGRSDE--SDQQESLHKLLTSGGLNEDFSFHYAQLQSNIIEAINELLVELEGTMENIAAQALEHIHSNEVIMTIGFSRTVEAFLKEAARKRKFHVIVAECAPFCQ--GHEMAVNLSKAGIETTVMTDAAIFAVMSRVNKVIIGTKTILANGALRAVTGTHTLALAAKHHSTPLIVCAPMFKLSPQFPNEEDSFHKFVAPEEVLPFTEGDILEKVSVHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPDDHVL |
||||
Thu Dec 26 14:41:46 2019 JOB CREATED : 0c9c9626-1cf4-41cf-b289-297c6389a3c0 Thu Dec 26 14:42:02 2019 STATUS CHANGED : N -> R Thu Dec 26 14:42:02 2019 INFO : JOB STARTED AT: 2019-12-26 14:42:02.134950 Thu Dec 26 14:42:02 2019 INFO : METHOD: 1 Thu Dec 26 14:42:02 2019 INFO : Building Profile... Thu Dec 26 14:42:02 2019 INFO : --E-value set to 0.001-- Thu Dec 26 14:55:06 2019 INFO : Homologue pool found... Thu Dec 26 14:55:06 2019 INFO : Verifying structure sequences of homologues... Thu Dec 26 14:56:55 2019 INFO : Starting homologue filtering... Thu Dec 26 14:57:20 2019 INFO : Getting structures from PDB... Thu Dec 26 14:57:27 2019 INFO : Creating modelling alignment... Thu Dec 26 14:57:27 2019 INFO : Modelling... Thu Dec 26 15:00:48 2019 INFO : Model 1 built Thu Dec 26 15:00:48 2019 INFO : Validating Calpha distances... Thu Dec 26 15:00:48 2019 INFO : Model 1 distances correct: True Thu Dec 26 15:00:48 2019 INFO : Modelling... Thu Dec 26 15:06:17 2019 INFO : Model 2 built Thu Dec 26 15:06:17 2019 INFO : Validating Calpha distances... Thu Dec 26 15:06:17 2019 INFO : Model 2 distances correct: True Thu Dec 26 15:06:17 2019 INFO : Modelling... Thu Dec 26 15:14:24 2019 INFO : Model 3 built Thu Dec 26 15:14:24 2019 INFO : Validating Calpha distances... Thu Dec 26 15:14:24 2019 INFO : Model 3 distances correct: True Thu Dec 26 15:14:24 2019 INFO : Modelling... Thu Dec 26 15:17:48 2019 INFO : Model 4 built Thu Dec 26 15:17:48 2019 INFO : Validating Calpha distances... Thu Dec 26 15:17:48 2019 INFO : Model 4 distances correct: True Thu Dec 26 15:17:48 2019 INFO : Modelling... Thu Dec 26 15:21:05 2019 INFO : Model 5 built Thu Dec 26 15:21:05 2019 INFO : Validating Calpha distances... Thu Dec 26 15:21:05 2019 INFO : Model 5 distances correct: True Thu Dec 26 15:21:27 2019 INFO : Finished modelling Thu Dec 26 15:21:27 2019 STATUS CHANGED : R -> P Thu Dec 26 15:21:29 2019 INFO : Finished edm surfaces: no map Thu Dec 26 15:21:29 2019 INFO : Checking topology... Thu Dec 26 15:22:17 2019 INFO : Knot matrices done... Thu Dec 26 15:22:17 2019 INFO : No knots found... Thu Dec 26 15:22:17 2019 INFO : No lassos found... Thu Dec 26 15:22:17 2019 INFO : Finishing... Thu Dec 26 15:22:17 2019 INFO : Job done Thu Dec 26 15:22:17 2019 STATUS CHANGED : P -> F Thu Dec 26 15:22:17 2019 STATUS CHANGED : F -> F |
GapRepairer