Job name:

4AKK chain B

1d46bb95-9b59-4a9d-a2ad-076044f07aed
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 16
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Unknot -50437
Model 2 Unknot -50440
Model 3 Unknot -50340
Model 4 Unknot -50275
Model 5 Unknot -50127
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Models
Similarity profile
Modelling alignment

Sat Feb  2 18:29:40 2019	JOB CREATED : 1d46bb95-9b59-4a9d-a2ad-076044f07aed
Sat Feb  2 18:30:01 2019	STATUS CHANGED : N -> R
Sat Feb  2 18:30:01 2019	INFO : JOB STARTED AT: 2019-02-02 18:30:01.638604
Sat Feb  2 18:30:01 2019	INFO : METHOD: 4
Sat Feb  2 18:30:04 2019	INFO : Homologue pool found...
Sat Feb  2 18:30:04 2019	ERROR : No homologues found using selected method. Maybe try specifying your own?
Sat Feb  2 18:30:04 2019	INFO : Proceeding using de novo modelling
Sat Feb  2 18:30:04 2019	INFO : Verifying structure sequences of homologues...
Sat Feb  2 18:30:04 2019	INFO : Getting structures from PDB...
Sat Feb  2 18:30:04 2019	INFO : Creating modelling alignment...
Sat Feb  2 18:30:04 2019	INFO : Modelling...
Sat Feb  2 18:32:08 2019	INFO : Model 1 built
Sat Feb  2 18:32:08 2019	INFO : Validating Calpha distances...
Sat Feb  2 18:32:08 2019	INFO : Model 1 distances correct: True
Sat Feb  2 18:32:08 2019	INFO : Modelling...
Sat Feb  2 18:34:03 2019	INFO : Model 2 built
Sat Feb  2 18:34:03 2019	INFO : Validating Calpha distances...
Sat Feb  2 18:34:03 2019	INFO : Model 2 distances correct: True
Sat Feb  2 18:34:03 2019	INFO : Modelling...
Sat Feb  2 18:36:01 2019	INFO : Model 3 built
Sat Feb  2 18:36:01 2019	INFO : Validating Calpha distances...
Sat Feb  2 18:36:01 2019	INFO : Model 3 distances correct: True
Sat Feb  2 18:36:01 2019	INFO : Modelling...
Sat Feb  2 18:39:22 2019	INFO : Model 4 built
Sat Feb  2 18:39:22 2019	INFO : Validating Calpha distances...
Sat Feb  2 18:39:22 2019	INFO : Model 4 distances correct: True
Sat Feb  2 18:39:22 2019	INFO : Modelling...
Sat Feb  2 18:41:25 2019	INFO : Model 5 built
Sat Feb  2 18:41:25 2019	INFO : Validating Calpha distances...
Sat Feb  2 18:41:25 2019	INFO : Model 5 distances correct: True
Sat Feb  2 18:41:49 2019	INFO : Finished modelling
Sat Feb  2 18:41:49 2019	STATUS CHANGED : R -> P
Sat Feb  2 18:42:04 2019	INFO : Finished edm surfaces: success
Sat Feb  2 18:42:04 2019	INFO : Checking topology...
Sat Feb  2 18:43:03 2019	INFO : Knot matrices done...
Sat Feb  2 18:43:03 2019	INFO : No knots found...
Sat Feb  2 18:43:03 2019	INFO : No lassos found...
Sat Feb  2 18:43:03 2019	INFO : Finishing...
Sat Feb  2 18:43:03 2019	INFO : Job done
Sat Feb  2 18:43:03 2019	STATUS CHANGED : P -> F
Sat Feb  2 18:43:03 2019	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling