GapRepairer

Models

Number of gaps:17

Gap lengths: 29, 17, 15, 14, 13, 13, 11, 10, 10, 9, 8, 8, 5, 5, 5, 5, 4

Model	Entanglement	Average	DOPE-HR (by gap length)			Smaller
		DOPE-HR	1st gap	2nd gap	3rd gap	gaps
Model 1	Unknot	-9052	-254	-822	-1744
Model 2	Unknot	-8916	-251	-878	-1521
Model 3	Unknot	-9871	-60	-755	-1361
Model 4	Unknot	-8466	-34	-841	-1803
Model 5	Unknot	-8105	107	-875	-1493
						None
Colour the base model according to the B-factor (lowest to highest)						Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

None of the models is perfect? By clicking the button below you can download a .pdb file with the currently shown mix of models - for each gap at most one model can be selected. If none of them is checked, the gap will be left as is. Fourth and further gaps (sorted by size) can only come from one of the models.

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Job Log

Tue Jul 11 17:36:51 2017	JOB CREATED : 2742c510-2563-43ef-be04-511363f79035
Wed Jul 12 17:39:02 2017	STATUS CHANGED : N -> R
Wed Jul 12 17:39:02 2017	INFO : JOB STARTED AT: 2017-07-12 17:39:02.578016
Wed Jul 12 17:39:02 2017	INFO : METHOD: 1
Wed Jul 12 17:39:02 2017	INFO : Precalculated profile found...
Wed Jul 12 17:39:02 2017	INFO : Homologue pool found...
Wed Jul 12 17:39:02 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Wed Jul 12 17:39:02 2017	INFO : Proceeding using de novo modelling
Wed Jul 12 17:39:02 2017	INFO : Verifying structure sequences of homologues...
Wed Jul 12 17:39:02 2017	INFO : Getting structures from PDB...
Wed Jul 12 17:39:03 2017	INFO : Creating modelling alignment...
Wed Jul 12 17:39:03 2017	INFO : Modelling...
Thu Jul 13 01:16:14 2017	INFO : Finished modelling
Thu Jul 13 01:16:14 2017	STATUS CHANGED : R -> P
Thu Jul 13 01:16:14 2017	INFO : Checking topology...
Thu Jul 13 01:37:27 2017	INFO : Knot matrices done...
Thu Jul 13 01:37:34 2017	INFO : No knots found...
Thu Jul 13 01:37:34 2017	INFO : No lassos found...
Thu Jul 13 01:37:34 2017	INFO : Finishing...
Thu Jul 13 01:37:35 2017	INFO : Job done
Thu Jul 13 01:37:35 2017	STATUS CHANGED : P -> F
Thu Jul 13 01:37:35 2017	STATUS CHANGED : F -> F

3IYK chain A