| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 91-136 | -- | -- | -- | |||
| Model 2 | Knot | K 31 | 91-136 | -- | -- | -- | |||
| Model 3 | Knot | K 31 | 91-136 | -- | -- | -- | |||
| Model 4 | Knot | K 31 | 91-136 | -- | -- | -- | |||
| Model 5 | Knot | K 31 | 91-136 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4H3Y |
A |
K +31 |
100.00% |
100.00% |
100.00% |
1.06 |
..Target: SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Feb 15 10:45:17 2018 JOB CREATED : 3ad5ef6e-45bf-41cd-bfce-94f23d10638a Thu Feb 15 10:46:01 2018 STATUS CHANGED : N -> R Thu Feb 15 10:46:01 2018 INFO : JOB STARTED AT: 2018-02-15 10:46:01.589715 Thu Feb 15 10:46:01 2018 INFO : METHOD: 1 Thu Feb 15 10:46:02 2018 INFO : Precalculated profile found... Thu Feb 15 10:46:02 2018 INFO : Homologue pool found... Thu Feb 15 10:46:02 2018 INFO : Verifying structure sequences of homologues... Thu Feb 15 10:46:37 2018 INFO : Starting homologue filtering... Thu Feb 15 10:47:01 2018 INFO : Getting structures from PDB... Thu Feb 15 10:47:04 2018 INFO : Creating modelling alignment... Thu Feb 15 10:47:04 2018 INFO : Adding other chains Thu Feb 15 10:47:04 2018 INFO : Modelling... Thu Feb 15 10:53:38 2018 INFO : Model 1 built Thu Feb 15 10:53:38 2018 INFO : Validating Calpha distances... Thu Feb 15 10:53:39 2018 INFO : Model 1 distances correct: True Thu Feb 15 10:53:39 2018 INFO : Modelling... Thu Feb 15 11:00:17 2018 INFO : Model 2 built Thu Feb 15 11:00:17 2018 INFO : Validating Calpha distances... Thu Feb 15 11:00:17 2018 INFO : Model 2 distances correct: True Thu Feb 15 11:00:17 2018 INFO : Modelling... Thu Feb 15 11:04:12 2018 INFO : Model 3 built Thu Feb 15 11:04:12 2018 INFO : Validating Calpha distances... Thu Feb 15 11:04:12 2018 INFO : Model 3 distances correct: True Thu Feb 15 11:04:12 2018 INFO : Modelling... Thu Feb 15 11:08:05 2018 INFO : Model 4 built Thu Feb 15 11:08:05 2018 INFO : Validating Calpha distances... Thu Feb 15 11:08:05 2018 INFO : Model 4 distances correct: True Thu Feb 15 11:08:05 2018 INFO : Modelling... Thu Feb 15 11:12:06 2018 INFO : Model 5 built Thu Feb 15 11:12:06 2018 INFO : Validating Calpha distances... Thu Feb 15 11:12:06 2018 INFO : Model 5 distances correct: True Thu Feb 15 11:12:46 2018 INFO : Finished modelling Thu Feb 15 11:12:46 2018 STATUS CHANGED : R -> P Thu Feb 15 11:12:46 2018 INFO : Checking topology... Thu Feb 15 11:15:11 2018 INFO : Knot matrices done... Thu Feb 15 11:17:49 2018 INFO : Some knots found! Thu Feb 15 11:17:49 2018 INFO : No lassos found... Thu Feb 15 11:17:49 2018 INFO : Finishing... Thu Feb 15 11:17:49 2018 STATUS CHANGED : P -> E Thu Feb 15 11:17:49 2018 ERROR : Error while finishing Thu Feb 15 11:17:49 2018 STATUS CHANGED : E -> F |
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