| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 195-390 | 390-400 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 195-390 | 390-400 | -- | -- | |||
| Model 3 | Slipknot | S 31 | 196-390 | 390-400 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 196-390 | 390-400 | -- | -- | |||
| Model 5 | Slipknot | S 31 | 192-390 | 390-400 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5A1S |
A |
Unknot |
91.69% |
100.00% |
77.78% |
0.52 |
..Target: G----FKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRKASFKVEEDEKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMM--- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Mon Oct 14 11:27:21 2019 JOB CREATED : 3ca43fd2-b7fd-4097-8d0f-2e7539754ff3 Mon Oct 14 11:28:02 2019 STATUS CHANGED : N -> R Mon Oct 14 11:28:02 2019 INFO : JOB STARTED AT: 2019-10-14 11:28:02.230592 Mon Oct 14 11:28:02 2019 INFO : METHOD: 1 Mon Oct 14 11:28:02 2019 INFO : Building Profile... Mon Oct 14 11:28:02 2019 INFO : --E-value set to 0.001-- Mon Oct 14 11:37:11 2019 INFO : Homologue pool found... Mon Oct 14 11:37:11 2019 INFO : Verifying structure sequences of homologues... Mon Oct 14 11:37:21 2019 INFO : Starting homologue filtering... Mon Oct 14 11:37:25 2019 INFO : Getting structures from PDB... Mon Oct 14 11:37:31 2019 INFO : Creating modelling alignment... Mon Oct 14 11:37:31 2019 INFO : Modelling... Mon Oct 14 11:44:14 2019 INFO : Model 1 built Mon Oct 14 11:44:14 2019 INFO : Validating Calpha distances... Mon Oct 14 11:44:14 2019 INFO : Model 1 distances correct: True Mon Oct 14 11:44:14 2019 INFO : Modelling... Mon Oct 14 11:49:06 2019 INFO : Model 2 built Mon Oct 14 11:49:06 2019 INFO : Validating Calpha distances... Mon Oct 14 11:49:06 2019 INFO : Model 2 distances correct: True Mon Oct 14 11:49:06 2019 INFO : Modelling... Mon Oct 14 11:52:18 2019 INFO : Model 3 built Mon Oct 14 11:52:18 2019 INFO : Validating Calpha distances... Mon Oct 14 11:52:18 2019 INFO : Model 3 distances correct: True Mon Oct 14 11:52:18 2019 INFO : Modelling... Mon Oct 14 11:58:46 2019 INFO : Model 4 built Mon Oct 14 11:58:46 2019 INFO : Validating Calpha distances... Mon Oct 14 11:58:46 2019 INFO : Model 4 distances correct: True Mon Oct 14 11:58:46 2019 INFO : Modelling... Mon Oct 14 12:03:40 2019 INFO : Model 5 built Mon Oct 14 12:03:40 2019 INFO : Validating Calpha distances... Mon Oct 14 12:03:40 2019 INFO : Model 5 distances correct: True Mon Oct 14 12:04:08 2019 INFO : Finished modelling Mon Oct 14 12:04:08 2019 STATUS CHANGED : R -> P Mon Oct 14 12:04:22 2019 INFO : Finished edm surfaces: success Mon Oct 14 12:04:22 2019 INFO : Checking topology... Mon Oct 14 12:08:23 2019 INFO : Knot matrices done... Mon Oct 14 12:09:23 2019 INFO : Some knots found! Mon Oct 14 12:09:23 2019 INFO : No lassos found... Mon Oct 14 12:09:23 2019 INFO : Finishing... Mon Oct 14 12:09:23 2019 INFO : Job done Mon Oct 14 12:09:23 2019 STATUS CHANGED : P -> F Mon Oct 14 12:09:23 2019 STATUS CHANGED : F -> F |
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