| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 4131 | 109-356 | 356-395 | -- | -- | |||
| Model 2 | Slipknot | S 4131 | 113-357 | 357-564 | -- | -- | |||
| Model 3 | Slipknot | S 4131 | 111-356 | 356-564 | -- | -- | |||
| Model 4 | Slipknot | S 4131 | 114-356 | 356-564 | -- | -- | |||
| Model 5 | Slipknot | S 4131 | 113-355 | 355-564 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4YZF |
A |
S +31,31,31 |
44.42% |
93.97% |
35.79% |
1.34 |
..Target: GLIKDIKRKAPFFASDFYDALNIQALSAILFIYLATVTNAITFGGLLGDATDNMQGVLESFLGTAVSGAIFCLFAGQPLTILSSTGPVLVFERLLFNFSKDNNFDYLEFRLWIGLWSAFLCLILVATDASFLVQYFTRFTEEGFSSLISFIFIYDAFKKMIKLADYYPINSNFKVGYNTLFSCTCVPPDPANISISNDTTLAPEYLPTMSSTDMYHNTTFDWAFLSKKECSKYGGNLVGNNCNFVPDITLMSFILFLGTYTSSMALKKFKTSPYFPTTARKLISDFAIILSILIFCVIDALV-GVDTPKLIVPSEFKPTSPNRGWFVPPFG---ENPWWVCLAAAIPALLVTILIFMDQQITAVIVNRKEHKLKKGAGYHLDLFWVAILMVICSLMALPWYVAATVISIAHIDSLKMETETSAPGEQPKFLGVREQRVTGTLVFILTGLSVFMAPILKFIPMPVLYGVFLYMGVASLNGVQFMDRLKLLLMPLKHQPDFIYLRHVPLRRVHLFTFLQVLCLALLWILKSTVAAIIFPVMILALVAVRKG-MDYLFSQHDLSFLDDVIPEK |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Mar 30 14:28:47 2018 JOB CREATED : 5aa8a05c-47bf-41cd-8f59-e0ce116b9d82 Fri Mar 30 14:29:02 2018 STATUS CHANGED : N -> R Fri Mar 30 14:29:02 2018 INFO : JOB STARTED AT: 2018-03-30 14:29:02.491131 Fri Mar 30 14:29:02 2018 INFO : METHOD: 1 Fri Mar 30 14:29:02 2018 INFO : Building Profile... Fri Mar 30 14:29:02 2018 INFO : --E-value set to 0.001-- Fri Mar 30 14:53:29 2018 INFO : Homologue pool found... Fri Mar 30 14:53:29 2018 INFO : Verifying structure sequences of homologues... Fri Mar 30 14:53:42 2018 INFO : Starting homologue filtering... Fri Mar 30 14:53:57 2018 INFO : Getting structures from PDB... Fri Mar 30 14:54:05 2018 INFO : Creating modelling alignment... Fri Mar 30 14:54:05 2018 INFO : Adding other chains Fri Mar 30 14:54:05 2018 INFO : Modelling... Fri Mar 30 16:45:50 2018 INFO : Model 1 built Fri Mar 30 16:45:50 2018 INFO : Validating Calpha distances... Fri Mar 30 16:45:50 2018 INFO : Model 1 distances correct: True Fri Mar 30 16:45:50 2018 INFO : Modelling... Fri Mar 30 18:33:57 2018 INFO : Model 2 built Fri Mar 30 18:33:57 2018 INFO : Validating Calpha distances... Fri Mar 30 18:33:57 2018 INFO : Model 2 distances correct: True Fri Mar 30 18:33:57 2018 INFO : Modelling... Fri Mar 30 19:48:10 2018 INFO : Model 3 built Fri Mar 30 19:48:10 2018 INFO : Validating Calpha distances... Fri Mar 30 19:48:10 2018 INFO : Model 3 distances correct: True Fri Mar 30 19:48:10 2018 INFO : Modelling... Fri Mar 30 21:03:52 2018 INFO : Model 4 built Fri Mar 30 21:03:52 2018 INFO : Validating Calpha distances... Fri Mar 30 21:03:52 2018 INFO : Model 4 distances correct: True Fri Mar 30 21:03:52 2018 INFO : Modelling... Fri Mar 30 21:57:01 2018 INFO : Model 5 built Fri Mar 30 21:57:01 2018 INFO : Validating Calpha distances... Fri Mar 30 21:57:01 2018 INFO : Model 5 distances correct: True Fri Mar 30 21:58:21 2018 INFO : Finished modelling Fri Mar 30 21:58:21 2018 STATUS CHANGED : R -> P Fri Mar 30 21:58:22 2018 INFO : Finished edm surfaces: no map Fri Mar 30 21:58:22 2018 INFO : Checking topology... Fri Mar 30 22:15:10 2018 INFO : Knot matrices done... Fri Mar 30 22:17:05 2018 INFO : Some knots found! Fri Mar 30 22:17:05 2018 INFO : No lassos found... Fri Mar 30 22:17:05 2018 INFO : Finishing... Fri Mar 30 22:17:06 2018 INFO : Job done Fri Mar 30 22:17:06 2018 STATUS CHANGED : P -> F Fri Mar 30 22:17:06 2018 STATUS CHANGED : F -> F |
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