| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L -1C | -- | -- | 66-154 | ||||
| Model 2 | Lasso | L -1C | -- | -- | 66-154 | ||||
| Model 3 | Lasso | L -1C | -- | -- | 66-154 | ||||
| Model 4 | Lasso | L -1C | -- | -- | 66-154 | ||||
| Model 5 | Lasso | L -1C | -- | -- | 66-154 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4UHR |
A |
Unknot |
100.00% |
100.00% |
100.00% |
0.67 |
..Target: SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYF |
||||
Sat Jun 9 21:35:42 2018 JOB CREATED : 5da24be4-68cc-43c0-8e5d-981ee118441f Sat Jun 9 21:36:02 2018 STATUS CHANGED : N -> R Sat Jun 9 21:36:02 2018 INFO : JOB STARTED AT: 2018-06-09 21:36:02.678884 Sat Jun 9 21:36:02 2018 INFO : METHOD: 1 Sat Jun 9 21:36:02 2018 INFO : Building Profile... Sat Jun 9 21:36:02 2018 INFO : --E-value set to 0.001-- Sat Jun 9 21:57:46 2018 INFO : Homologue pool found... Sat Jun 9 21:57:46 2018 INFO : Verifying structure sequences of homologues... Sat Jun 9 22:04:39 2018 INFO : Starting homologue filtering... Sat Jun 9 22:05:48 2018 INFO : Getting structures from PDB... Sat Jun 9 22:05:55 2018 INFO : Creating modelling alignment... Sat Jun 9 22:05:55 2018 INFO : Modelling... Sat Jun 9 22:09:31 2018 INFO : Model 1 built Sat Jun 9 22:09:31 2018 INFO : Validating Calpha distances... Sat Jun 9 22:09:31 2018 INFO : Model 1 distances correct: True Sat Jun 9 22:09:31 2018 INFO : Modelling... Sat Jun 9 22:12:58 2018 INFO : Model 2 built Sat Jun 9 22:12:58 2018 INFO : Validating Calpha distances... Sat Jun 9 22:12:59 2018 INFO : Model 2 distances correct: True Sat Jun 9 22:12:59 2018 INFO : Modelling... Sat Jun 9 22:19:17 2018 INFO : Model 3 built Sat Jun 9 22:19:17 2018 INFO : Validating Calpha distances... Sat Jun 9 22:19:17 2018 INFO : Model 3 distances correct: True Sat Jun 9 22:19:17 2018 INFO : Modelling... Sat Jun 9 22:23:01 2018 INFO : Model 4 built Sat Jun 9 22:23:01 2018 INFO : Validating Calpha distances... Sat Jun 9 22:23:01 2018 INFO : Model 4 distances correct: True Sat Jun 9 22:23:01 2018 INFO : Modelling... Sat Jun 9 22:26:42 2018 INFO : Model 5 built Sat Jun 9 22:26:42 2018 INFO : Validating Calpha distances... Sat Jun 9 22:26:42 2018 INFO : Model 5 distances correct: True Sat Jun 9 22:27:21 2018 INFO : Finished modelling Sat Jun 9 22:27:21 2018 STATUS CHANGED : R -> P Sat Jun 9 22:27:35 2018 INFO : Finished edm surfaces: success Sat Jun 9 22:27:35 2018 INFO : Checking topology... Sat Jun 9 22:27:37 2018 INFO : Knot matrices done... Sat Jun 9 22:27:37 2018 INFO : No knots found... Sat Jun 9 22:27:53 2018 INFO : Some lassos found! Sat Jun 9 22:27:53 2018 INFO : Finishing... Sat Jun 9 22:27:54 2018 INFO : Job done Sat Jun 9 22:27:54 2018 STATUS CHANGED : P -> F Sat Jun 9 22:27:54 2018 STATUS CHANGED : F -> F |
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