GapRepairer

Models

Number of gaps:1

Gap lengths: 15

Model	Entanglement	Average	DOPE-HR (by gap length)
		DOPE-HR	1st gap
Model 1	Non-trivial	-17573	-2381
Model 2	Non-trivial	-17411	-2220
Model 3	Non-trivial	-17327	-2136
Model 4	Non-trivial	-17283	-2091
Model 5	Non-trivial	-17277	-2086
Colour the base model according to the B-factor (lowest to highest)				Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

EntanglementHelpKnotProtLassoProtLinkProt

Model	Type		Knot core	Slipknot	Lasso	Piercing	Show
			range	loop range	loop	position	in JSmol
Model 1	Lasso	L_+1N	--	--	94-144	+55
Model 2	Lasso	L_+1N	--	--	94-144	+55
Model 3	Lasso	L_+1N	--	--	94-144	+55
Model 4	Lasso	L_+1N	--	--	94-144	+55
Model 5	Lasso	L_+1N	--	--	94-144	+55
							None

Topologies marked by an OK sign () are in accordance with the template topology.

Warning: Entanglement type is assigned automatically - for more complicated topologies there may be some disagreements with manually curated databases.

Lasso thumbnails

Lasso help

Model 1

Model 2

Model 3

Model 4

Model 5

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Job Log

Sun Jul 23 14:54:26 2017	JOB CREATED : 60ae03c0-efa6-48c4-81ca-a21e9f98058d
Sun Jul 23 14:55:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 14:55:02 2017	INFO : JOB STARTED AT: 2017-07-23 14:55:02.527911
Sun Jul 23 14:55:02 2017	INFO : METHOD: 1
Sun Jul 23 14:55:02 2017	INFO : Precalculated profile found...
Sun Jul 23 14:55:02 2017	INFO : Homologue pool found...
Sun Jul 23 14:55:02 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Sun Jul 23 14:55:02 2017	INFO : Proceeding using de novo modelling
Sun Jul 23 14:55:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 14:55:02 2017	INFO : Getting structures from PDB...
Sun Jul 23 14:55:02 2017	INFO : Creating modelling alignment...
Sun Jul 23 14:55:02 2017	INFO : Modelling...
Sun Jul 23 14:56:09 2017	INFO : Model 1 built
Sun Jul 23 14:56:09 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:56:09 2017	INFO : Model 1 distances correct: True
Sun Jul 23 14:56:09 2017	INFO : Modelling...
Sun Jul 23 14:57:20 2017	INFO : Model 2 built
Sun Jul 23 14:57:20 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:57:20 2017	INFO : Model 2 distances correct: True
Sun Jul 23 14:57:20 2017	INFO : Modelling...
Sun Jul 23 14:58:43 2017	INFO : Model 3 built
Sun Jul 23 14:58:43 2017	INFO : Validating Calpha distances...
Sun Jul 23 14:58:43 2017	INFO : Model 3 distances correct: True
Sun Jul 23 14:58:43 2017	INFO : Modelling...
Sun Jul 23 15:00:03 2017	INFO : Model 4 built
Sun Jul 23 15:00:03 2017	INFO : Validating Calpha distances...
Sun Jul 23 15:00:03 2017	INFO : Model 4 distances correct: True
Sun Jul 23 15:00:03 2017	INFO : Modelling...
Sun Jul 23 15:01:23 2017	INFO : Model 5 built
Sun Jul 23 15:01:23 2017	INFO : Validating Calpha distances...
Sun Jul 23 15:01:23 2017	INFO : Model 5 distances correct: True
Sun Jul 23 15:01:33 2017	INFO : Finished modelling
Sun Jul 23 15:01:33 2017	STATUS CHANGED : R -> P
Sun Jul 23 15:01:33 2017	INFO : Checking topology...
Sun Jul 23 15:03:06 2017	INFO : Knot matrices done...
Sun Jul 23 15:03:06 2017	INFO : No knots found...
Sun Jul 23 15:03:09 2017	INFO : Some lassos found!
Sun Jul 23 15:03:09 2017	INFO : Finishing...
Sun Jul 23 15:03:09 2017	INFO : Job done
Sun Jul 23 15:03:09 2017	STATUS CHANGED : P -> F
Sun Jul 23 15:03:09 2017	STATUS CHANGED : F -> F

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