Job name:

4XUM chain A

75049a51-a97b-43f0-970f-b9cd6c10cd8c
Finished
Electron density map:

Differential EDM:
Models Number of gaps:1 Gap lengths: 12
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Err -37720
Model 2 Err -37494
Model 3 Unknot -37370
Model 4 Err -37360
Model 5 Err -37140
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Help
PDB
code		 Chain Entanglement
type		 Seq
identity		 Total gap
coverage		 Total gap
identity		 RMSD [Å] Pairwise alignment to the target: gap


3ADU
B
Unknot
100.00%
100.00%
100.00%
0.76

..Target: ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
Template: ESADLRALAKHLYDSYIKSFPLTKAKARAILTG----KSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTET--SLHPLLQEI----Y
Help
PDB
code		 Chain Knot
type		 Gap
coverage		 Gap
identity		 >Target_Sequence: gap

KIKFKHITPLQEQSKEVA
3ADU B Unknot 100.00% 100.00%

KIKFKHITPLQEQSKEVA

Models
Similarity profile
Modelling alignment

Sun Apr  7 11:38:18 2019	JOB CREATED : 75049a51-a97b-43f0-970f-b9cd6c10cd8c
Sun Apr  7 11:39:01 2019	STATUS CHANGED : N -> R
Sun Apr  7 11:39:01 2019	INFO : JOB STARTED AT: 2019-04-07 11:39:01.978497
Sun Apr  7 11:39:01 2019	INFO : METHOD: 1
Sun Apr  7 11:39:02 2019	INFO : Building Profile...
Sun Apr  7 11:39:02 2019	INFO : --E-value set to 0.001--
Sun Apr  7 11:47:56 2019	INFO : Homologue pool found...
Sun Apr  7 11:47:56 2019	INFO : Verifying structure sequences of homologues...
Sun Apr  7 12:49:09 2019	INFO : Starting homologue filtering...
Sun Apr  7 12:50:34 2019	INFO : Getting structures from PDB...
Sun Apr  7 12:50:38 2019	INFO : Creating modelling alignment...
Sun Apr  7 12:50:38 2019	INFO : Modelling...
Sun Apr  7 12:54:39 2019	INFO : Model 1 built
Sun Apr  7 12:54:39 2019	INFO : Validating Calpha distances...
Sun Apr  7 12:54:39 2019	INFO : Model 1 distances correct: True
Sun Apr  7 12:54:39 2019	INFO : Modelling...
Sun Apr  7 12:58:43 2019	INFO : Model 2 built
Sun Apr  7 12:58:43 2019	INFO : Validating Calpha distances...
Sun Apr  7 12:58:43 2019	INFO : Model 2 distances correct: True
Sun Apr  7 12:58:43 2019	INFO : Modelling...
Sun Apr  7 13:02:41 2019	INFO : Model 3 built
Sun Apr  7 13:02:41 2019	INFO : Validating Calpha distances...
Sun Apr  7 13:02:41 2019	INFO : Model 3 distances correct: True
Sun Apr  7 13:02:41 2019	INFO : Modelling...
Sun Apr  7 13:06:39 2019	INFO : Model 4 built
Sun Apr  7 13:06:39 2019	INFO : Validating Calpha distances...
Sun Apr  7 13:06:39 2019	INFO : Model 4 distances correct: True
Sun Apr  7 13:06:39 2019	INFO : Modelling...
Sun Apr  7 13:10:44 2019	INFO : Model 5 built
Sun Apr  7 13:10:44 2019	INFO : Validating Calpha distances...
Sun Apr  7 13:10:44 2019	INFO : Model 5 distances correct: True
Sun Apr  7 13:11:01 2019	INFO : Finished modelling
Sun Apr  7 13:11:01 2019	STATUS CHANGED : R -> P
Sun Apr  7 13:11:10 2019	INFO : Finished edm surfaces: success
Sun Apr  7 13:11:10 2019	INFO : Checking topology...
Sun Apr  7 13:11:10 2019	INFO : Knot matrices done...
Sun Apr  7 13:11:10 2019	INFO : No knots found...
Sun Apr  7 13:11:10 2019	INFO : No lassos found...
Sun Apr  7 13:11:10 2019	INFO : Finishing...
Sun Apr  7 13:11:11 2019	INFO : Job done
Sun Apr  7 13:11:11 2019	STATUS CHANGED : P -> F
Sun Apr  7 13:11:11 2019	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling