| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2V70 |
A |
Unknot |
36.67% |
50.00% |
15.62% |
1.30 |
..Target: TLPPFLPCELQPHGLVNCNWLFLKSVPHFSAAAPRDNVTSLSLLSNRIHHLHDSDFAQLSNLQKLNLKWNCPPAGLSPMHFPCHMTIEPNTFLAVPTLEELNLSYNGITTVPALPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVAPGALLGLGNLTHLSLKYNNLTTVPRSLPPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQLHSDTFSHLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLYDCITKTKAFQGLAQLRRLNLSFNYHKKVSFAHLTLAPSFGSLLSLQELDMHGIFFRSLSQKTLQPLARLPM-LQRLYLQMN-FINQAQLGIFKDFPGLRYIDLSDNRISGAVEPVATTGEVDGGKKVWLTSRDLTPGPLDTPSSEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSISQAVNGSQFVPLTSLQVLDLSHNKLDLYHGRSFTELPRLEALDLSYNSQPFSMRGVGHNLSFVAQLPTLRYLSLAHNGIHSRVSQQLCSTSLWALDFSGNSLSQMWAEGDLYLRFFQGLRSLIRLDLSQNRLHTLLPCTLGNLPKSLQLLRLRNNYLAFFNWSSLTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVVPGFFALATRLRELNLSANALRTVEPSWFGFLAGSLEVLDVSANPLHCACGAAFVDFLLQVQAAVPGLPSRVKCGSP---GQLQGRSIFAQDL---- |
||||
Sun Jul 23 15:14:19 2017 JOB CREATED : 8b338c2b-b30a-4857-9714-b77ee5bdf3dc Mon Jul 24 03:36:02 2017 STATUS CHANGED : N -> R Mon Jul 24 03:36:02 2017 INFO : JOB STARTED AT: 2017-07-24 03:36:02.784904 Mon Jul 24 03:36:02 2017 INFO : METHOD: 1 Mon Jul 24 03:36:02 2017 INFO : Precalculated profile found... Mon Jul 24 03:36:03 2017 INFO : Homologue pool found... Mon Jul 24 03:36:03 2017 INFO : Verifying structure sequences of homologues... Mon Jul 24 03:46:07 2017 INFO : Starting homologue filtering... Mon Jul 24 03:47:22 2017 INFO : Getting structures from PDB... Mon Jul 24 03:47:25 2017 INFO : Creating modelling alignment... Mon Jul 24 03:47:25 2017 INFO : Modelling... Mon Jul 24 03:55:38 2017 INFO : Model 1 built Mon Jul 24 03:55:38 2017 INFO : Validating Calpha distances... Mon Jul 24 03:55:38 2017 INFO : Model 1 distances correct: True Mon Jul 24 03:55:38 2017 INFO : Modelling... Mon Jul 24 04:04:50 2017 INFO : Model 2 built Mon Jul 24 04:04:50 2017 INFO : Validating Calpha distances... Mon Jul 24 04:04:51 2017 INFO : Model 2 distances correct: True Mon Jul 24 04:04:51 2017 INFO : Modelling... Mon Jul 24 04:13:06 2017 INFO : Model 3 built Mon Jul 24 04:13:06 2017 INFO : Validating Calpha distances... Mon Jul 24 04:13:06 2017 INFO : Model 3 distances correct: True Mon Jul 24 04:13:06 2017 INFO : Modelling... Mon Jul 24 04:28:27 2017 INFO : Model 4 built Mon Jul 24 04:28:27 2017 INFO : 1 gaps will be remodelled Mon Jul 24 04:53:09 2017 INFO : Validating Calpha distances... Mon Jul 24 04:53:09 2017 INFO : Model 4 distances correct: True Mon Jul 24 04:53:09 2017 INFO : Modelling... Mon Jul 24 05:11:31 2017 INFO : Model 5 built Mon Jul 24 05:11:31 2017 INFO : Validating Calpha distances... Mon Jul 24 05:11:31 2017 INFO : Model 5 distances correct: True Mon Jul 24 05:12:40 2017 INFO : Finished modelling Mon Jul 24 05:12:40 2017 STATUS CHANGED : R -> P Mon Jul 24 05:12:40 2017 INFO : Checking topology... Mon Jul 24 06:06:33 2017 INFO : Knot matrices done... Mon Jul 24 06:06:33 2017 INFO : No knots found... Mon Jul 24 06:06:34 2017 INFO : No lassos found... Mon Jul 24 06:06:34 2017 INFO : Finishing... Mon Jul 24 06:06:35 2017 INFO : Job done Mon Jul 24 06:06:35 2017 STATUS CHANGED : P -> F Mon Jul 24 06:06:35 2017 STATUS CHANGED : F -> F |
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