| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3D0E |
A |
Unknot |
100.00% |
45.00% |
45.00% |
0.40 |
..Target: KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITIXPPDRYDSLGLLELDQRTHFPQFDYSASIR |
||||
Sun Jul 23 14:59:29 2017 JOB CREATED : d7c300ad-1215-4cfb-a68e-af46d20971dc Sun Jul 23 23:30:02 2017 STATUS CHANGED : N -> R Sun Jul 23 23:30:02 2017 INFO : JOB STARTED AT: 2017-07-23 23:30:02.554197 Sun Jul 23 23:30:02 2017 INFO : METHOD: 1 Sun Jul 23 23:30:02 2017 INFO : Precalculated profile found... Sun Jul 23 23:30:02 2017 INFO : Homologue pool found... Sun Jul 23 23:30:02 2017 INFO : Verifying structure sequences of homologues... Mon Jul 24 02:32:25 2017 INFO : Starting homologue filtering... Mon Jul 24 02:33:12 2017 INFO : Getting structures from PDB... Mon Jul 24 02:33:14 2017 INFO : Creating modelling alignment... Mon Jul 24 02:33:14 2017 INFO : Modelling... Mon Jul 24 02:35:55 2017 INFO : Model 1 built Mon Jul 24 02:35:55 2017 INFO : Validating Calpha distances... Mon Jul 24 02:35:55 2017 INFO : Model 1 distances correct: True Mon Jul 24 02:35:55 2017 INFO : Modelling... Mon Jul 24 02:40:22 2017 INFO : Model 2 built Mon Jul 24 02:40:22 2017 INFO : Validating Calpha distances... Mon Jul 24 02:40:22 2017 INFO : Model 2 distances correct: True Mon Jul 24 02:40:22 2017 INFO : Modelling... Mon Jul 24 02:43:04 2017 INFO : Model 3 built Mon Jul 24 02:43:04 2017 INFO : Validating Calpha distances... Mon Jul 24 02:43:04 2017 INFO : Model 3 distances correct: True Mon Jul 24 02:43:04 2017 INFO : Modelling... Mon Jul 24 02:45:49 2017 INFO : Model 4 built Mon Jul 24 02:45:49 2017 INFO : Validating Calpha distances... Mon Jul 24 02:45:49 2017 INFO : Model 4 distances correct: True Mon Jul 24 02:45:49 2017 INFO : Modelling... Mon Jul 24 02:48:34 2017 INFO : Model 5 built Mon Jul 24 02:48:34 2017 INFO : Validating Calpha distances... Mon Jul 24 02:48:34 2017 INFO : Model 5 distances correct: True Mon Jul 24 02:49:01 2017 INFO : Finished modelling Mon Jul 24 02:49:01 2017 STATUS CHANGED : R -> P Mon Jul 24 02:49:01 2017 INFO : Checking topology... Mon Jul 24 02:55:02 2017 INFO : Knot matrices done... Mon Jul 24 02:55:02 2017 INFO : No knots found... Mon Jul 24 02:55:02 2017 INFO : No lassos found... Mon Jul 24 02:55:02 2017 INFO : Finishing... Mon Jul 24 02:55:02 2017 INFO : Job done Mon Jul 24 02:55:02 2017 STATUS CHANGED : P -> F Mon Jul 24 02:55:02 2017 STATUS CHANGED : F -> F |
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