Job name:

5IKJ chain A

de569ad2-bf76-4578-8249-433eab282fbb
Finished
Electron density map:

Differential EDM:
Models Number of gaps:5 Gap lengths: 48, 18, 12, 8, 5
Model Entanglement Average DOPE-HR (by gap length) Smaller
DOPE-HR 1st gap2nd gap3rd gapgaps
Model 1 Unknot -54182

Model 2 Unknot -44502

Model 3 Unknot -44372

Model 4 Unknot -46744

Model 5 Unknot -45079

None
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
None of the models is perfect? By clicking the button below you can download a .pdb file with the currently shown mix of models - for each gap at most one model can be selected. If none of them is checked, the gap will be left as is. Fourth and further gaps (sorted by size) can only come from one of the models.
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Models
Similarity profile
Modelling alignment

Sun Jul 23 15:14:16 2017	JOB CREATED : de569ad2-bf76-4578-8249-433eab282fbb
Mon Jul 24 03:31:02 2017	STATUS CHANGED : N -> R
Mon Jul 24 03:31:02 2017	INFO : JOB STARTED AT: 2017-07-24 03:31:02.543751
Mon Jul 24 03:31:02 2017	INFO : METHOD: 1
Mon Jul 24 03:31:02 2017	INFO : Precalculated profile found...
Mon Jul 24 03:31:02 2017	INFO : Homologue pool found...
Mon Jul 24 03:31:02 2017	ERROR : No homologues found using selected method. Maybe try specifying your own?
Mon Jul 24 03:31:02 2017	INFO : Proceeding using de novo modelling
Mon Jul 24 03:31:02 2017	INFO : Verifying structure sequences of homologues...
Mon Jul 24 03:31:02 2017	INFO : Getting structures from PDB...
Mon Jul 24 03:31:03 2017	INFO : Creating modelling alignment...
Mon Jul 24 03:31:03 2017	INFO : Modelling...
Mon Jul 24 04:39:35 2017	INFO : Model 1 built
Mon Jul 24 04:39:35 2017	INFO : 1 gaps will be remodelled
Mon Jul 24 04:53:37 2017	INFO : Validating Calpha distances...
Mon Jul 24 04:53:37 2017	INFO : Model 1 distances correct: True
Mon Jul 24 04:53:37 2017	INFO : Modelling...
Mon Jul 24 05:58:49 2017	INFO : Model 2 built
Mon Jul 24 05:58:49 2017	INFO : 1 gaps will be remodelled
Mon Jul 24 06:10:39 2017	INFO : Validating Calpha distances...
Mon Jul 24 06:10:39 2017	INFO : Model 2 distances correct: True
Mon Jul 24 06:10:39 2017	INFO : Modelling...
Mon Jul 24 07:08:48 2017	INFO : Model 3 built
Mon Jul 24 07:08:48 2017	INFO : 1 gaps will be remodelled
Mon Jul 24 07:19:46 2017	INFO : Validating Calpha distances...
Mon Jul 24 07:19:46 2017	INFO : Model 3 distances correct: True
Mon Jul 24 07:19:46 2017	INFO : Modelling...
Mon Jul 24 08:15:17 2017	INFO : Model 4 built
Mon Jul 24 08:15:17 2017	INFO : 1 gaps will be remodelled
Mon Jul 24 08:24:45 2017	INFO : Validating Calpha distances...
Mon Jul 24 08:24:45 2017	INFO : Model 4 distances correct: True
Mon Jul 24 08:24:45 2017	INFO : Modelling...
Mon Jul 24 09:16:13 2017	INFO : Model 5 built
Mon Jul 24 09:16:13 2017	INFO : Validating Calpha distances...
Mon Jul 24 09:16:13 2017	INFO : Model 5 distances correct: True
Mon Jul 24 09:16:47 2017	INFO : Finished modelling
Mon Jul 24 09:16:47 2017	STATUS CHANGED : R -> P
Mon Jul 24 09:16:47 2017	INFO : Checking topology...
Mon Jul 24 09:33:37 2017	INFO : Knot matrices done...
Mon Jul 24 09:33:46 2017	INFO : No knots found...
Mon Jul 24 09:33:47 2017	INFO : No lassos found...
Mon Jul 24 09:33:47 2017	INFO : Finishing...
Mon Jul 24 09:33:47 2017	INFO : Job done
Mon Jul 24 09:33:47 2017	STATUS CHANGED : P -> F
Mon Jul 24 09:33:47 2017	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling