| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2OM5 |
A |
Unknot |
17.25% |
100.00% |
45.45% |
1.14 |
..Target: PRNRAFEADWLKFTKTPPTKLQQADGATIEI--VCEXXGSQVPSIQW-----------------VVGHL----PRSELD-----DLDSN----QVAEEA------------------------------------------------PSAIVRVRSSHIIDHVLSE---ART-------YTCVGRT----GSKTIYA--STVVHPPRSSRL--------TPEKTY----------------------------PGAQKP------------------------------------RIIYTEKTHLDLXGSNIQLPCRVHARPRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDXGNYKCIARNVVGKDTADTFVYPVLN |
||||
Fri Dec 1 09:37:07 2017 JOB CREATED : 06521eb7-f721-49f0-88be-5dd8df49249f Fri Dec 1 11:49:02 2017 STATUS CHANGED : N -> R Fri Dec 1 11:49:02 2017 INFO : JOB STARTED AT: 2017-12-01 11:49:02.079597 Fri Dec 1 11:49:02 2017 INFO : METHOD: 1 Fri Dec 1 11:49:02 2017 INFO : Building Profile... Fri Dec 1 11:49:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 12:10:10 2017 INFO : Homologue pool found... Fri Dec 1 12:10:10 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 20:19:20 2017 INFO : Starting homologue filtering... Fri Dec 1 20:20:07 2017 INFO : Getting structures from PDB... Fri Dec 1 20:20:10 2017 INFO : Creating modelling alignment... Fri Dec 1 20:20:10 2017 INFO : Modelling... Fri Dec 1 20:22:29 2017 INFO : Model 1 built Fri Dec 1 20:22:29 2017 INFO : Validating Calpha distances... Fri Dec 1 20:22:29 2017 INFO : Model 1 distances correct: True Fri Dec 1 20:22:29 2017 INFO : Modelling... Fri Dec 1 20:24:44 2017 INFO : Model 2 built Fri Dec 1 20:24:44 2017 INFO : Validating Calpha distances... Fri Dec 1 20:24:44 2017 INFO : Model 2 distances correct: True Fri Dec 1 20:24:44 2017 INFO : Modelling... Fri Dec 1 20:26:45 2017 INFO : Model 3 built Fri Dec 1 20:26:45 2017 INFO : Validating Calpha distances... Fri Dec 1 20:26:45 2017 INFO : Model 3 distances correct: True Fri Dec 1 20:26:45 2017 INFO : Modelling... Fri Dec 1 20:28:59 2017 INFO : Model 4 built Fri Dec 1 20:28:59 2017 INFO : Validating Calpha distances... Fri Dec 1 20:28:59 2017 INFO : Model 4 distances correct: True Fri Dec 1 20:28:59 2017 INFO : Modelling... Fri Dec 1 20:31:07 2017 INFO : Model 5 built Fri Dec 1 20:31:07 2017 INFO : Validating Calpha distances... Fri Dec 1 20:31:07 2017 INFO : Model 5 distances correct: True Fri Dec 1 20:31:29 2017 INFO : Finished modelling Fri Dec 1 20:31:29 2017 STATUS CHANGED : R -> P Fri Dec 1 20:31:29 2017 INFO : Checking topology... Fri Dec 1 20:32:06 2017 INFO : Knot matrices done... Fri Dec 1 20:32:40 2017 INFO : No knots found... Fri Dec 1 20:32:41 2017 INFO : No lassos found... Fri Dec 1 20:32:41 2017 INFO : Finishing... Fri Dec 1 20:32:41 2017 STATUS CHANGED : P -> E Fri Dec 1 20:32:41 2017 ERROR : Error while finishing Fri Dec 1 20:32:41 2017 STATUS CHANGED : E -> F |
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