| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 192-388 | 388-399 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 191-390 | 390-399 | -- | -- | |||
| Model 3 | Slipknot | S 31 | 191-390 | 390-399 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 200-390 | 390-399 | -- | -- | |||
| Model 5 | Slipknot | S 31 | 196-389 | 389-399 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5A1S |
A |
Unknot |
91.69% |
100.00% |
80.00% |
0.57 |
..Target: -----FKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRKASFKVEEDEKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMM--- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Mon Sep 2 14:43:32 2019 JOB CREATED : 083e5b86-ffb5-4b85-92f4-9967631da298 Mon Sep 2 14:44:02 2019 STATUS CHANGED : N -> R Mon Sep 2 14:44:02 2019 INFO : JOB STARTED AT: 2019-09-02 14:44:02.082071 Mon Sep 2 14:44:02 2019 INFO : METHOD: 1 Mon Sep 2 14:44:02 2019 INFO : Building Profile... Mon Sep 2 14:44:02 2019 INFO : --E-value set to 0.001-- Mon Sep 2 14:54:18 2019 INFO : Homologue pool found... Mon Sep 2 14:54:18 2019 INFO : Verifying structure sequences of homologues... Mon Sep 2 14:54:25 2019 INFO : Starting homologue filtering... Mon Sep 2 14:54:31 2019 INFO : Getting structures from PDB... Mon Sep 2 14:54:35 2019 INFO : Creating modelling alignment... Mon Sep 2 14:54:35 2019 INFO : Modelling... Mon Sep 2 14:56:29 2019 INFO : Model 1 built Mon Sep 2 14:56:29 2019 INFO : Validating Calpha distances... Mon Sep 2 14:56:29 2019 INFO : Model 1 distances correct: True Mon Sep 2 14:56:29 2019 INFO : Modelling... Mon Sep 2 14:58:16 2019 INFO : Model 2 built Mon Sep 2 14:58:16 2019 INFO : Validating Calpha distances... Mon Sep 2 14:58:16 2019 INFO : Model 2 distances correct: True Mon Sep 2 14:58:16 2019 INFO : Modelling... Mon Sep 2 15:00:02 2019 INFO : Model 3 built Mon Sep 2 15:00:02 2019 INFO : Validating Calpha distances... Mon Sep 2 15:00:02 2019 INFO : Model 3 distances correct: True Mon Sep 2 15:00:02 2019 INFO : Modelling... Mon Sep 2 15:01:50 2019 INFO : Model 4 built Mon Sep 2 15:01:50 2019 INFO : Validating Calpha distances... Mon Sep 2 15:01:50 2019 INFO : Model 4 distances correct: True Mon Sep 2 15:01:50 2019 INFO : Modelling... Mon Sep 2 15:03:45 2019 INFO : Model 5 built Mon Sep 2 15:03:45 2019 INFO : Validating Calpha distances... Mon Sep 2 15:03:45 2019 INFO : Model 5 distances correct: True Mon Sep 2 15:04:15 2019 INFO : Finished modelling Mon Sep 2 15:04:15 2019 STATUS CHANGED : R -> P Mon Sep 2 15:04:22 2019 INFO : Finished edm surfaces: success Mon Sep 2 15:04:22 2019 INFO : Checking topology... Mon Sep 2 15:07:15 2019 INFO : Knot matrices done... Mon Sep 2 15:08:12 2019 INFO : Some knots found! Mon Sep 2 15:08:12 2019 INFO : No lassos found... Mon Sep 2 15:08:12 2019 INFO : Finishing... Mon Sep 2 15:08:13 2019 INFO : Job done Mon Sep 2 15:08:13 2019 STATUS CHANGED : P -> F Mon Sep 2 15:08:13 2019 STATUS CHANGED : F -> F |
GapRepairer