| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4DJH |
B |
Unknot |
100.00% |
50.00% |
50.00% |
0.62 |
..Target: SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCFP |
||||
4N9N |
A |
Unknot |
45.33% |
100.00% |
0.00% |
0.97 |
..Target: SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMS-----VDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSGNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYREKDRNLRRITRL---VLVVVAVFVVC-WTPIHIFILVE--ALGSTSHSTAALSSYYFC------------------IALGY----------TNSSLNPILY-AFLDENF-------------------------------KRCFRD---FCFP- |
||||
Fri Dec 21 10:42:06 2018 JOB CREATED : 0afed282-f934-49e0-8188-26ab9e420b74 Fri Dec 21 10:43:02 2018 STATUS CHANGED : N -> R Fri Dec 21 10:43:02 2018 INFO : JOB STARTED AT: 2018-12-21 10:43:02.310502 Fri Dec 21 10:43:02 2018 INFO : METHOD: 1 Fri Dec 21 10:43:02 2018 INFO : Building Profile... Fri Dec 21 10:43:02 2018 INFO : --E-value set to 1.0-- Fri Dec 21 11:02:51 2018 INFO : Homologue pool found... Fri Dec 21 11:02:51 2018 INFO : Verifying structure sequences of homologues... Fri Dec 21 11:34:17 2018 INFO : Starting homologue filtering... Fri Dec 21 11:35:50 2018 INFO : Getting structures from PDB... Fri Dec 21 11:36:00 2018 INFO : Creating modelling alignment... Fri Dec 21 11:36:00 2018 INFO : Modelling... Fri Dec 21 11:43:04 2018 INFO : Model 1 built Fri Dec 21 11:43:04 2018 INFO : Validating Calpha distances... Fri Dec 21 11:43:04 2018 INFO : Model 1 distances correct: True Fri Dec 21 11:43:04 2018 INFO : Modelling... Fri Dec 21 11:50:11 2018 INFO : Model 2 built Fri Dec 21 11:50:11 2018 INFO : Validating Calpha distances... Fri Dec 21 11:50:11 2018 INFO : Model 2 distances correct: True Fri Dec 21 11:50:11 2018 INFO : Modelling... Fri Dec 21 11:57:08 2018 INFO : Model 3 built Fri Dec 21 11:57:08 2018 INFO : Validating Calpha distances... Fri Dec 21 11:57:08 2018 INFO : Model 3 distances correct: True Fri Dec 21 11:57:08 2018 INFO : Modelling... Fri Dec 21 12:13:36 2018 INFO : Model 4 built Fri Dec 21 12:13:36 2018 INFO : Validating Calpha distances... Fri Dec 21 12:13:36 2018 INFO : Model 4 distances correct: True Fri Dec 21 12:13:36 2018 INFO : Modelling... Fri Dec 21 12:20:40 2018 INFO : Model 5 built Fri Dec 21 12:20:40 2018 INFO : Validating Calpha distances... Fri Dec 21 12:20:40 2018 INFO : Model 5 distances correct: True Fri Dec 21 12:21:07 2018 INFO : Finished modelling Fri Dec 21 12:21:07 2018 STATUS CHANGED : R -> P Fri Dec 21 12:22:36 2018 INFO : Finished edm surfaces: success Fri Dec 21 12:22:36 2018 INFO : Checking topology... Fri Dec 21 12:23:54 2018 INFO : Knot matrices done... Fri Dec 21 12:23:54 2018 INFO : No knots found... Fri Dec 21 12:23:55 2018 INFO : No lassos found... Fri Dec 21 12:23:55 2018 INFO : Finishing... Fri Dec 21 12:23:55 2018 INFO : Job done Fri Dec 21 12:23:55 2018 STATUS CHANGED : P -> F Fri Dec 21 12:23:55 2018 STATUS CHANGED : F -> F |
GapRepairer