GapRepairer

Show only modeled chain

Models

Number of gaps:1

Gap lengths: 20

Model	Entanglement	Average	DOPE-HR (by gap length)
		DOPE-HR	1st gap
Model 1	Err	-452670	-2435
Model 2	Err	-452603	-2304
Model 3	Err	-452250	-2230
Model 4	Err	-452194	-2073
Model 5	Unknot	-452227	-2014
Colour the base model according to the B-factor (lowest to highest)				Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Fri Feb 22 11:53:29 2019	JOB CREATED : 10466b4a-9b32-4242-8625-5bde1947926b
Fri Feb 22 11:54:02 2019	STATUS CHANGED : N -> R
Fri Feb 22 11:54:02 2019	INFO : JOB STARTED AT: 2019-02-22 11:54:02.226459
Fri Feb 22 11:54:02 2019	INFO : METHOD: 1
Fri Feb 22 11:54:02 2019	INFO : Building Profile...
Fri Feb 22 11:54:02 2019	INFO : --E-value set to 0.001--
Fri Feb 22 11:58:38 2019	INFO : Homologue pool found...
Fri Feb 22 11:58:38 2019	ERROR : No homologues found using selected method. Maybe try specifying your own?
Fri Feb 22 11:58:38 2019	INFO : Proceeding using de novo modelling
Fri Feb 22 11:58:38 2019	INFO : Verifying structure sequences of homologues...
Fri Feb 22 11:58:38 2019	INFO : Getting structures from PDB...
Fri Feb 22 11:58:44 2019	INFO : Creating modelling alignment...
Fri Feb 22 11:58:44 2019	INFO : Adding other chains
Fri Feb 22 11:58:44 2019	INFO : Modelling...
Fri Feb 22 14:50:14 2019	INFO : Model 1 built
Fri Feb 22 14:50:14 2019	INFO : Validating Calpha distances...
Fri Feb 22 14:50:14 2019	INFO : Model 1 distances correct: True
Fri Feb 22 14:50:14 2019	INFO : Modelling...
Fri Feb 22 17:43:24 2019	INFO : Model 2 built
Fri Feb 22 17:43:24 2019	INFO : Validating Calpha distances...
Fri Feb 22 17:43:24 2019	INFO : Model 2 distances correct: True
Fri Feb 22 17:43:24 2019	INFO : Modelling...
Fri Feb 22 22:18:57 2019	INFO : Model 3 built
Fri Feb 22 22:18:57 2019	INFO : Validating Calpha distances...
Fri Feb 22 22:18:57 2019	INFO : Model 3 distances correct: True
Fri Feb 22 22:18:57 2019	INFO : Modelling...
Sat Feb 23 02:09:52 2019	INFO : Model 4 built
Sat Feb 23 02:09:52 2019	INFO : Validating Calpha distances...
Sat Feb 23 02:09:52 2019	INFO : Model 4 distances correct: True
Sat Feb 23 02:09:52 2019	INFO : Modelling...
Sat Feb 23 05:02:57 2019	INFO : Model 5 built
Sat Feb 23 05:02:57 2019	INFO : Validating Calpha distances...
Sat Feb 23 05:02:57 2019	INFO : Model 5 distances correct: True
Sat Feb 23 05:12:30 2019	INFO : Finished modelling
Sat Feb 23 05:12:30 2019	STATUS CHANGED : R -> P
Sat Feb 23 05:12:32 2019	INFO : Finished edm surfaces: no map
Sat Feb 23 05:12:32 2019	INFO : Checking topology...
Sat Feb 23 05:12:34 2019	INFO : Knot matrices done...
Sat Feb 23 05:12:34 2019	INFO : No knots found...
Sat Feb 23 05:12:35 2019	INFO : No lassos found...
Sat Feb 23 05:12:35 2019	INFO : Finishing...
Sat Feb 23 05:12:39 2019	INFO : Job done
Sat Feb 23 05:12:39 2019	STATUS CHANGED : P -> F
Sat Feb 23 05:12:39 2019	STATUS CHANGED : F -> F

3JA7 chain A