| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 5231 | 12-322 | 322-343 | -- | -- | |||
| Model 2 | Slipknot | S 5231 | 12-322 | 322-343 | -- | -- | |||
| Model 3 | Slipknot | S 5231 | 12-322 | 322-343 | -- | -- | |||
| Model 4 | Slipknot | S 5231 | 10-352 | 352-364 | -- | -- | |||
| Model 5 | Slipknot | S 5231 | 12-322 | 322-340 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2NWW |
A |
S +31,+31 |
100.00% |
100.00% |
100.00% |
0.88 |
..Target: EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:41:00 2017 JOB CREATED : 144c41fb-ae81-4ec2-a887-7e5599956c10 Fri Dec 1 16:59:02 2017 STATUS CHANGED : N -> R Fri Dec 1 16:59:02 2017 INFO : JOB STARTED AT: 2017-12-01 16:59:02.010756 Fri Dec 1 16:59:02 2017 INFO : METHOD: 1 Fri Dec 1 16:59:02 2017 INFO : Building Profile... Fri Dec 1 16:59:02 2017 INFO : --E-value set to 0.001-- Fri Dec 1 17:13:39 2017 INFO : Homologue pool found... Fri Dec 1 17:13:39 2017 INFO : Verifying structure sequences of homologues... Fri Dec 1 17:19:38 2017 INFO : Starting homologue filtering... Fri Dec 1 17:20:39 2017 INFO : Getting structures from PDB... Fri Dec 1 17:20:45 2017 INFO : Creating modelling alignment... Fri Dec 1 17:20:45 2017 INFO : Modelling... Fri Dec 1 17:26:28 2017 INFO : Model 1 built Fri Dec 1 17:26:28 2017 INFO : Validating Calpha distances... Fri Dec 1 17:26:28 2017 INFO : Model 1 distances correct: True Fri Dec 1 17:26:28 2017 INFO : Modelling... Fri Dec 1 17:32:22 2017 INFO : Model 2 built Fri Dec 1 17:32:22 2017 INFO : Validating Calpha distances... Fri Dec 1 17:32:22 2017 INFO : Model 2 distances correct: True Fri Dec 1 17:32:22 2017 INFO : Modelling... Fri Dec 1 17:38:22 2017 INFO : Model 3 built Fri Dec 1 17:38:22 2017 INFO : Validating Calpha distances... Fri Dec 1 17:38:22 2017 INFO : Model 3 distances correct: True Fri Dec 1 17:38:22 2017 INFO : Modelling... Fri Dec 1 17:44:33 2017 INFO : Model 4 built Fri Dec 1 17:44:33 2017 INFO : Validating Calpha distances... Fri Dec 1 17:44:33 2017 INFO : Model 4 distances correct: True Fri Dec 1 17:44:33 2017 INFO : Modelling... Fri Dec 1 17:50:42 2017 INFO : Model 5 built Fri Dec 1 17:50:42 2017 INFO : Validating Calpha distances... Fri Dec 1 17:50:42 2017 INFO : Model 5 distances correct: True Fri Dec 1 17:51:31 2017 INFO : Finished modelling Fri Dec 1 17:51:31 2017 STATUS CHANGED : R -> P Fri Dec 1 17:51:31 2017 INFO : Checking topology... Fri Dec 1 17:58:05 2017 INFO : Knot matrices done... Fri Dec 1 18:00:22 2017 INFO : Some knots found! Fri Dec 1 18:00:22 2017 INFO : No lassos found... Fri Dec 1 18:00:22 2017 INFO : Finishing... Fri Dec 1 18:00:22 2017 STATUS CHANGED : P -> E Fri Dec 1 18:00:22 2017 ERROR : Error while finishing Fri Dec 1 18:00:22 2017 STATUS CHANGED : E -> F |
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