| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 41 | 13-270 | -- | -- | -- | |||
| Model 2 | Knot | K 41 | 13-258 | -- | -- | -- | |||
| Model 3 | Knot | K 41 | 13-279 | -- | -- | -- | |||
| Model 4 | Knot | K 41 | 13-280 | -- | -- | -- | |||
| Model 5 | Knot | K 41 | 13-280 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5AKP |
B |
Unknot |
99.67% |
212.50% |
212.50% |
1.23 |
..Target: VCAREPIHIPGLIQPYGVLLVIDPADGRIVQASTTAADLLGVPMAALLGMPYTQVLTLPEAQPFAVDDQPQHLMHAEVRFPQRATPPASAWVAAWHLYPQQWLVEMEPRDARLLDVTLREAMPLLRSVERDPGIAEAAVRVAKGLRSLIGFDRVMIYRFDEEWNGDIIAEARKPELEAYLGLHYPASAIPAQARALYLRNRVRQIADVGYQPSPIQPTVHPQLGTPVDLSDVSLRSVSPVHLEYLANMGVTATLVASIVVNDALWGLISCHHYSPHFTNHAMRDVTDAVARTLAGRIGALQAVARARLESVLLTVREKLITDFNDAEHMTVELLDDMAPDLMDVVDADGVAIFHGNDISRHGTTPDVAALRRIRDHIESEHHEALREDAVGALHVDAIGEVFPELADLAPLAAGFIFVPLMPQSRSALLWTRREQIQQIKWAGNPQLAKLEDIPNSRLSPRKSFDLWQQTVRGRARRWSPLHLESARSLRVLIELMERKRFQQDFTLLEASLSRLRDGVAIIERGTANAAHRLLFVNTAFADVCGSDVAELIGRELQTLYASDAPRANVELLQDALRNGRAAYVTLPLQVSDGAPVYRQFHLEPLPSPSGVTAHWLLQLR- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Thu Mar 1 11:56:50 2018 JOB CREATED : 190a90e7-6e39-476b-b126-4bec6a1cc31f Thu Mar 1 11:57:01 2018 STATUS CHANGED : N -> R Thu Mar 1 11:57:01 2018 INFO : JOB STARTED AT: 2018-03-01 11:57:01.883471 Thu Mar 1 11:57:01 2018 INFO : METHOD: 1 Thu Mar 1 11:57:01 2018 INFO : Building Profile... Thu Mar 1 11:57:01 2018 INFO : --E-value set to 0.001-- Thu Mar 1 12:22:07 2018 INFO : Homologue pool found... Thu Mar 1 12:22:07 2018 INFO : Verifying structure sequences of homologues... Thu Mar 1 12:29:56 2018 INFO : Starting homologue filtering... Thu Mar 1 12:30:41 2018 INFO : Getting structures from PDB... Thu Mar 1 12:30:59 2018 INFO : Creating modelling alignment... Thu Mar 1 12:30:59 2018 INFO : Modelling... Thu Mar 1 12:40:08 2018 INFO : Model 1 built Thu Mar 1 12:40:08 2018 INFO : Validating Calpha distances... Thu Mar 1 12:40:08 2018 INFO : Model 1 distances correct: True Thu Mar 1 12:40:08 2018 INFO : Modelling... Thu Mar 1 12:49:26 2018 INFO : Model 2 built Thu Mar 1 12:49:26 2018 INFO : Validating Calpha distances... Thu Mar 1 12:49:26 2018 INFO : Model 2 distances correct: True Thu Mar 1 12:49:26 2018 INFO : Modelling... Thu Mar 1 12:58:12 2018 INFO : Model 3 built Thu Mar 1 12:58:12 2018 INFO : Validating Calpha distances... Thu Mar 1 12:58:12 2018 INFO : Model 3 distances correct: True Thu Mar 1 12:58:12 2018 INFO : Modelling... Thu Mar 1 13:12:30 2018 INFO : Model 4 built Thu Mar 1 13:12:30 2018 INFO : Validating Calpha distances... Thu Mar 1 13:12:30 2018 INFO : Model 4 distances correct: True Thu Mar 1 13:12:30 2018 INFO : Modelling... Thu Mar 1 13:21:06 2018 INFO : Model 5 built Thu Mar 1 13:21:06 2018 INFO : Validating Calpha distances... Thu Mar 1 13:21:06 2018 INFO : Model 5 distances correct: True Thu Mar 1 13:21:56 2018 INFO : Finished modelling Thu Mar 1 13:21:56 2018 STATUS CHANGED : R -> P Thu Mar 1 13:21:58 2018 INFO : Finished edm surfaces: no map Thu Mar 1 13:21:58 2018 INFO : Checking topology... Thu Mar 1 13:35:07 2018 INFO : Knot matrices done... Thu Mar 1 13:37:14 2018 INFO : Some knots found! Thu Mar 1 13:37:14 2018 INFO : No lassos found... Thu Mar 1 13:37:14 2018 INFO : Finishing... Thu Mar 1 13:37:15 2018 INFO : Job done Thu Mar 1 13:37:15 2018 STATUS CHANGED : P -> F Thu Mar 1 13:37:15 2018 STATUS CHANGED : F -> F |
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