| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 49-355 | 355-371 | -- | -- | |||
| Model 2 | Slipknot | S 31 | 52-355 | 355-371 | -- | -- | |||
| Model 3 | Slipknot | S 31 | 48-352 | 352-371 | -- | -- | |||
| Model 4 | Slipknot | S 31 | 52-356 | 356-371 | -- | -- | |||
| Model 5 | Slipknot | S 31 | 52-357 | 357-371 | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
2NWW |
A |
S +31,+31 |
99.75% |
100.00% |
100.00% |
0.68 |
..Target: YPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Tue Oct 15 12:27:41 2019 JOB CREATED : 1a6ac975-742a-41ca-a21c-b1e5929c6cb4 Tue Oct 15 12:28:02 2019 STATUS CHANGED : N -> R Tue Oct 15 12:28:02 2019 INFO : JOB STARTED AT: 2019-10-15 12:28:02.298691 Tue Oct 15 12:28:02 2019 INFO : METHOD: 1 Tue Oct 15 12:28:02 2019 INFO : Precalculated profile found... Tue Oct 15 12:28:02 2019 INFO : Homologue pool found... Tue Oct 15 12:28:02 2019 INFO : Verifying structure sequences of homologues... Tue Oct 15 12:30:21 2019 INFO : Starting homologue filtering... Tue Oct 15 12:30:45 2019 INFO : Getting structures from PDB... Tue Oct 15 12:30:51 2019 INFO : Creating modelling alignment... Tue Oct 15 12:30:51 2019 INFO : Modelling... Tue Oct 15 12:47:56 2019 INFO : Model 1 built Tue Oct 15 12:47:56 2019 INFO : Validating Calpha distances... Tue Oct 15 12:47:56 2019 INFO : Model 1 distances correct: True Tue Oct 15 12:47:56 2019 INFO : Modelling... Tue Oct 15 12:55:21 2019 INFO : Model 2 built Tue Oct 15 12:55:21 2019 INFO : Validating Calpha distances... Tue Oct 15 12:55:21 2019 INFO : Model 2 distances correct: True Tue Oct 15 12:55:21 2019 INFO : Modelling... Tue Oct 15 13:12:14 2019 INFO : Model 3 built Tue Oct 15 13:12:14 2019 INFO : Validating Calpha distances... Tue Oct 15 13:12:14 2019 INFO : Model 3 distances correct: True Tue Oct 15 13:12:14 2019 INFO : Modelling... Tue Oct 15 13:19:46 2019 INFO : Model 4 built Tue Oct 15 13:19:46 2019 INFO : Validating Calpha distances... Tue Oct 15 13:19:46 2019 INFO : Model 4 distances correct: True Tue Oct 15 13:19:46 2019 INFO : Modelling... Tue Oct 15 13:26:49 2019 INFO : Model 5 built Tue Oct 15 13:26:49 2019 INFO : Validating Calpha distances... Tue Oct 15 13:26:49 2019 INFO : Model 5 distances correct: True Tue Oct 15 13:27:13 2019 INFO : Finished modelling Tue Oct 15 13:27:13 2019 STATUS CHANGED : R -> P Tue Oct 15 13:27:27 2019 INFO : Finished edm surfaces: success Tue Oct 15 13:27:27 2019 INFO : Checking topology... Tue Oct 15 13:30:12 2019 INFO : Knot matrices done... Tue Oct 15 13:31:08 2019 INFO : Some knots found! Tue Oct 15 13:31:08 2019 INFO : No lassos found... Tue Oct 15 13:31:08 2019 INFO : Finishing... Tue Oct 15 13:31:09 2019 INFO : Job done Tue Oct 15 13:31:09 2019 STATUS CHANGED : P -> F Tue Oct 15 13:31:09 2019 STATUS CHANGED : F -> F |
GapRepairer