| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K +31 | 85-132 | -- | -- | -- | |||
| Model 2 | Knot | K +31 | 85-132 | -- | -- | -- | |||
| Model 3 | Knot | K +31 | 85-132 | -- | -- | -- | |||
| Model 4 | Knot | K +31 | 85-132 | -- | -- | -- | |||
| Model 5 | Knot | K +31 | 85-132 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4MCB |
B |
K +31 |
100.00% |
100.00% |
100.00% |
0.99 |
..Target: HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sun Aug 6 23:40:48 2017 JOB CREATED : 1b6d5ecc-3caa-4d08-a36c-a54fb4240827 Sun Aug 6 23:41:02 2017 STATUS CHANGED : N -> R Sun Aug 6 23:41:02 2017 INFO : JOB STARTED AT: 2017-08-06 23:41:02.656155 Sun Aug 6 23:41:02 2017 INFO : METHOD: 1 Sun Aug 6 23:41:02 2017 INFO : Precalculated profile found... Sun Aug 6 23:41:02 2017 INFO : Homologue pool found... Sun Aug 6 23:41:02 2017 INFO : Verifying structure sequences of homologues... Sun Aug 6 23:42:24 2017 INFO : Starting homologue filtering... Sun Aug 6 23:42:56 2017 INFO : Getting structures from PDB... Sun Aug 6 23:42:59 2017 INFO : Creating modelling alignment... Sun Aug 6 23:42:59 2017 INFO : Modelling... Sun Aug 6 23:43:47 2017 INFO : Model 1 built Sun Aug 6 23:43:47 2017 INFO : Validating Calpha distances... Sun Aug 6 23:43:47 2017 INFO : Model 1 distances correct: True Sun Aug 6 23:43:47 2017 INFO : Modelling... Sun Aug 6 23:44:33 2017 INFO : Model 2 built Sun Aug 6 23:44:33 2017 INFO : Validating Calpha distances... Sun Aug 6 23:44:33 2017 INFO : Model 2 distances correct: True Sun Aug 6 23:44:33 2017 INFO : Modelling... Sun Aug 6 23:45:20 2017 INFO : Model 3 built Sun Aug 6 23:45:20 2017 INFO : Validating Calpha distances... Sun Aug 6 23:45:20 2017 INFO : Model 3 distances correct: True Sun Aug 6 23:45:20 2017 INFO : Modelling... Sun Aug 6 23:46:08 2017 INFO : Model 4 built Sun Aug 6 23:46:08 2017 INFO : Validating Calpha distances... Sun Aug 6 23:46:08 2017 INFO : Model 4 distances correct: True Sun Aug 6 23:46:08 2017 INFO : Modelling... Sun Aug 6 23:46:54 2017 INFO : Model 5 built Sun Aug 6 23:46:54 2017 INFO : Validating Calpha distances... Sun Aug 6 23:46:54 2017 INFO : Model 5 distances correct: True Sun Aug 6 23:47:07 2017 INFO : Finished modelling Sun Aug 6 23:47:07 2017 STATUS CHANGED : R -> P Sun Aug 6 23:47:07 2017 INFO : Checking topology... Sun Aug 6 23:53:52 2017 INFO : Knot matrices done... Sun Aug 6 23:55:39 2017 INFO : Some knots found! Sun Aug 6 23:55:39 2017 INFO : No lassos found... Sun Aug 6 23:55:39 2017 INFO : Finishing... Sun Aug 6 23:55:39 2017 INFO : Job done Sun Aug 6 23:55:39 2017 STATUS CHANGED : P -> F Sun Aug 6 23:55:39 2017 STATUS CHANGED : F -> F |
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