GapRepairer

Models

Number of gaps:1

Gap lengths: 9

Model	Entanglement	Average	DOPE-HR (by gap length)
		DOPE-HR	1st gap
Model 1	Unknot	-28249	-998
Model 2	Unknot	-28231	-986
Model 3	Unknot	-28093	-894
Model 4	Unknot	-28046	-884
Model 5	Unknot	-28062	-820
Colour the base model according to the B-factor (lowest to highest)				Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Sun Jul 23 14:56:44 2017	JOB CREATED : 203f1ba7-b903-4580-9d49-4d6fcb277f92
Sun Jul 23 18:15:02 2017	STATUS CHANGED : N -> R
Sun Jul 23 18:15:02 2017	INFO : JOB STARTED AT: 2017-07-23 18:15:02.758599
Sun Jul 23 18:15:02 2017	INFO : METHOD: 1
Sun Jul 23 18:15:02 2017	INFO : Precalculated profile found...
Sun Jul 23 18:15:02 2017	INFO : Homologue pool found...
Sun Jul 23 18:15:02 2017	INFO : Verifying structure sequences of homologues...
Sun Jul 23 18:23:01 2017	INFO : Starting homologue filtering...
Sun Jul 23 18:23:44 2017	INFO : Getting structures from PDB...
Sun Jul 23 18:23:45 2017	INFO : Creating modelling alignment...
Sun Jul 23 18:23:45 2017	INFO : Modelling...
Sun Jul 23 18:26:24 2017	INFO : Model 1 built
Sun Jul 23 18:26:24 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:26:24 2017	INFO : Model 1 distances correct: True
Sun Jul 23 18:26:24 2017	INFO : Modelling...
Sun Jul 23 18:28:57 2017	INFO : Model 2 built
Sun Jul 23 18:28:57 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:28:57 2017	INFO : Model 2 distances correct: True
Sun Jul 23 18:28:57 2017	INFO : Modelling...
Sun Jul 23 18:33:10 2017	INFO : Model 3 built
Sun Jul 23 18:33:10 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:33:11 2017	INFO : Model 3 distances correct: True
Sun Jul 23 18:33:11 2017	INFO : Modelling...
Sun Jul 23 18:37:26 2017	INFO : Model 4 built
Sun Jul 23 18:37:26 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:37:26 2017	INFO : Model 4 distances correct: True
Sun Jul 23 18:37:26 2017	INFO : Modelling...
Sun Jul 23 18:40:02 2017	INFO : Model 5 built
Sun Jul 23 18:40:02 2017	INFO : Validating Calpha distances...
Sun Jul 23 18:40:02 2017	INFO : Model 5 distances correct: True
Sun Jul 23 18:40:23 2017	INFO : Finished modelling
Sun Jul 23 18:40:23 2017	STATUS CHANGED : R -> P
Sun Jul 23 18:40:23 2017	INFO : Checking topology...
Sun Jul 23 18:43:15 2017	INFO : Knot matrices done...
Sun Jul 23 18:43:15 2017	INFO : No knots found...
Sun Jul 23 18:43:15 2017	INFO : No lassos found...
Sun Jul 23 18:43:15 2017	INFO : Finishing...
Sun Jul 23 18:43:15 2017	INFO : Job done
Sun Jul 23 18:43:15 2017	STATUS CHANGED : P -> F
Sun Jul 23 18:43:15 2017	STATUS CHANGED : F -> F

4XE2 chain A