| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L -1N | -- | -- | 222-387 | -209 | |||
| Model 2 | Lasso | L -1N | -- | -- | 222-387 | -208 | |||
| Model 3 | Lasso | L -1N | -- | -- | 222-387 | -208 | |||
| Model 4 | Lasso | L -1N | -- | -- | 222-387 | -208 | |||
| Model 5 | Lasso | L -1N | -- | -- | 222-387 | -209 | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
3QI1 |
A |
Unknot |
100.00% |
146.15% |
146.15% |
0.76 |
..Target: RGSFVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGAWAGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN |
||||
Sun Feb 9 17:16:38 2020 JOB CREATED : 25b1fca3-99b7-4671-b843-f1b192859abd Sun Feb 9 17:17:02 2020 STATUS CHANGED : N -> R Sun Feb 9 17:17:02 2020 INFO : JOB STARTED AT: 2020-02-09 17:17:02.038443 Sun Feb 9 17:17:02 2020 INFO : METHOD: 2 Sun Feb 9 17:17:02 2020 INFO : Building Profile... Sun Feb 9 17:17:02 2020 INFO : --E-value set to 0.001-- Sun Feb 9 17:35:56 2020 INFO : Homologue pool found... Sun Feb 9 17:35:56 2020 INFO : Verifying structure sequences of homologues... Sun Feb 9 18:17:50 2020 INFO : Starting homologue filtering... Sun Feb 9 18:18:15 2020 INFO : Getting structures from PDB... Sun Feb 9 18:18:21 2020 INFO : Creating modelling alignment... Sun Feb 9 18:18:21 2020 INFO : Modelling... Sun Feb 9 18:26:55 2020 INFO : Model 1 built Sun Feb 9 18:26:55 2020 INFO : Validating Calpha distances... Sun Feb 9 18:26:55 2020 INFO : Model 1 distances correct: True Sun Feb 9 18:26:55 2020 INFO : Modelling... Sun Feb 9 18:35:16 2020 INFO : Model 2 built Sun Feb 9 18:35:16 2020 INFO : Validating Calpha distances... Sun Feb 9 18:35:16 2020 INFO : Model 2 distances correct: True Sun Feb 9 18:35:16 2020 INFO : Modelling... Sun Feb 9 18:44:05 2020 INFO : Model 3 built Sun Feb 9 18:44:05 2020 INFO : Validating Calpha distances... Sun Feb 9 18:44:05 2020 INFO : Model 3 distances correct: True Sun Feb 9 18:44:05 2020 INFO : Modelling... Sun Feb 9 18:49:28 2020 INFO : Model 4 built Sun Feb 9 18:49:28 2020 INFO : Validating Calpha distances... Sun Feb 9 18:49:28 2020 INFO : Model 4 distances correct: True Sun Feb 9 18:49:28 2020 INFO : Modelling... Sun Feb 9 19:01:55 2020 INFO : Model 5 built Sun Feb 9 19:01:55 2020 INFO : Validating Calpha distances... Sun Feb 9 19:01:55 2020 INFO : Model 5 distances correct: True Sun Feb 9 19:02:25 2020 INFO : Finished modelling Sun Feb 9 19:02:25 2020 STATUS CHANGED : R -> P Sun Feb 9 19:02:44 2020 INFO : Finished edm surfaces: success Sun Feb 9 19:02:44 2020 INFO : Checking topology... Sun Feb 9 19:03:44 2020 INFO : Knot matrices done... Sun Feb 9 19:03:44 2020 INFO : No knots found... Sun Feb 9 19:03:54 2020 INFO : Some lassos found! Sun Feb 9 19:03:54 2020 INFO : Finishing... Sun Feb 9 19:03:55 2020 INFO : Job done Sun Feb 9 19:03:55 2020 STATUS CHANGED : P -> F Sun Feb 9 19:03:55 2020 STATUS CHANGED : F -> F |
GapRepairer