| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K +31 | 84-131 | -- | -- | -- | |||
| Model 2 | Knot | K +31 | 84-131 | -- | -- | -- | |||
| Model 3 | Knot | K +31 | 84-131 | -- | -- | -- | |||
| Model 4 | Knot | K +31 | 84-131 | -- | -- | -- | |||
| Model 5 | Knot | K +31 | 84-131 | -- | -- | -- | |||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4MCB |
B |
K +31 |
89.30% |
100.00% |
100.00% |
0.79 |
..Target: MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTW------------------------LR |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sun Jul 23 15:12:15 2017 JOB CREATED : 26530795-2932-496e-9eb1-be4097aae8b1 Mon Jul 24 03:12:02 2017 STATUS CHANGED : N -> R Mon Jul 24 03:12:02 2017 INFO : JOB STARTED AT: 2017-07-24 03:12:02.431163 Mon Jul 24 03:12:02 2017 INFO : METHOD: 1 Mon Jul 24 03:12:02 2017 INFO : Precalculated profile found... Mon Jul 24 03:12:02 2017 INFO : Homologue pool found... Mon Jul 24 03:12:02 2017 INFO : Verifying structure sequences of homologues... Mon Jul 24 03:12:36 2017 INFO : Starting homologue filtering... Mon Jul 24 03:13:10 2017 INFO : Getting structures from PDB... Mon Jul 24 03:13:13 2017 INFO : Creating modelling alignment... Mon Jul 24 03:13:13 2017 INFO : Modelling... Mon Jul 24 03:15:46 2017 INFO : Model 1 built Mon Jul 24 03:15:46 2017 INFO : Validating Calpha distances... Mon Jul 24 03:15:46 2017 INFO : Model 1 distances correct: True Mon Jul 24 03:15:46 2017 INFO : Modelling... Mon Jul 24 03:18:30 2017 INFO : Model 2 built Mon Jul 24 03:18:30 2017 INFO : Validating Calpha distances... Mon Jul 24 03:18:30 2017 INFO : Model 2 distances correct: True Mon Jul 24 03:18:30 2017 INFO : Modelling... Mon Jul 24 03:21:08 2017 INFO : Model 3 built Mon Jul 24 03:21:08 2017 INFO : Validating Calpha distances... Mon Jul 24 03:21:08 2017 INFO : Model 3 distances correct: True Mon Jul 24 03:21:08 2017 INFO : Modelling... Mon Jul 24 03:25:15 2017 INFO : Model 4 built Mon Jul 24 03:25:15 2017 INFO : Validating Calpha distances... Mon Jul 24 03:25:15 2017 INFO : Model 4 distances correct: True Mon Jul 24 03:25:15 2017 INFO : Modelling... Mon Jul 24 03:28:00 2017 INFO : Model 5 built Mon Jul 24 03:28:00 2017 INFO : Validating Calpha distances... Mon Jul 24 03:28:00 2017 INFO : Model 5 distances correct: True Mon Jul 24 03:28:14 2017 INFO : Finished modelling Mon Jul 24 03:28:14 2017 STATUS CHANGED : R -> P Mon Jul 24 03:28:14 2017 INFO : Checking topology... Mon Jul 24 03:33:02 2017 INFO : Knot matrices done... Mon Jul 24 03:35:18 2017 INFO : Some knots found! Mon Jul 24 03:35:18 2017 INFO : No lassos found... Mon Jul 24 03:35:18 2017 INFO : Finishing... Mon Jul 24 03:35:18 2017 INFO : Job done Mon Jul 24 03:35:18 2017 STATUS CHANGED : P -> F Mon Jul 24 03:35:18 2017 STATUS CHANGED : F -> F |
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