| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | S 41-31 | 776-923 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -747,+777,-798,+812 | ||||
| Model 2 | Knot | S 41-31 | 775-923 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -747,+776,-798,+811 | ||||
| Model 3 | Knot | S 41-31 | 776-921 | -- | -- | -- | |||
| Lasso | LL -4,-3 | -- | -- | 822-884 | -749,+776,-799,+811 | ||||
| Model 4 | Slipknot | S 41-31 | 772-916 | 916-966 | -- | -- | |||
| Lasso | LL -4,-2 | -- | -- | 822-884 | -756,+774,-800,+810 | ||||
| Model 5 | Slipknot | S 4131 | 773-916 | 916-966 | -- | -- | |||
| Lasso | LL -4,-2 | -- | -- | 822-884 | -756,+774,-800,+810 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4G1E |
A |
Unknot |
97.30% |
33.33% |
33.33% |
1.30 |
..Target: FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSPDHVFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSLQTTEKNDTVAGQGERDHLITKRDLALSEGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEFPYKNLPIEDITNSTLVTTNVTWGIQPAP------------------MPVPVWVI |
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|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Sun Jul 23 14:55:46 2017 JOB CREATED : 27b4ba9c-ddd3-4dd2-a81f-3efcb2bc8ed4 Sun Jul 23 16:47:02 2017 STATUS CHANGED : N -> R Sun Jul 23 16:47:02 2017 INFO : JOB STARTED AT: 2017-07-23 16:47:02.868094 Sun Jul 23 16:47:02 2017 INFO : METHOD: 1 Sun Jul 23 16:47:02 2017 INFO : Precalculated profile found... Sun Jul 23 16:47:03 2017 INFO : Homologue pool found... Sun Jul 23 16:47:03 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 16:52:55 2017 INFO : Starting homologue filtering... Sun Jul 23 16:54:29 2017 INFO : Getting structures from PDB... Sun Jul 23 16:55:10 2017 INFO : Creating modelling alignment... Sun Jul 23 16:55:10 2017 INFO : Modelling... Sun Jul 23 17:03:46 2017 INFO : Model 1 built Sun Jul 23 17:03:46 2017 INFO : Validating Calpha distances... Sun Jul 23 17:03:46 2017 INFO : Model 1 distances correct: True Sun Jul 23 17:03:46 2017 INFO : Modelling... Sun Jul 23 17:13:14 2017 INFO : Model 2 built Sun Jul 23 17:13:14 2017 INFO : Validating Calpha distances... Sun Jul 23 17:13:14 2017 INFO : Model 2 distances correct: True Sun Jul 23 17:13:14 2017 INFO : Modelling... Sun Jul 23 17:21:50 2017 INFO : Model 3 built Sun Jul 23 17:21:50 2017 INFO : Validating Calpha distances... Sun Jul 23 17:21:50 2017 INFO : Model 3 distances correct: True Sun Jul 23 17:21:50 2017 INFO : Modelling... Sun Jul 23 17:30:25 2017 INFO : Model 4 built Sun Jul 23 17:30:25 2017 INFO : Validating Calpha distances... Sun Jul 23 17:30:25 2017 INFO : Model 4 distances correct: True Sun Jul 23 17:30:25 2017 INFO : Modelling... Sun Jul 23 17:39:09 2017 INFO : Model 5 built Sun Jul 23 17:39:09 2017 INFO : Validating Calpha distances... Sun Jul 23 17:39:09 2017 INFO : Model 5 distances correct: True Sun Jul 23 17:40:32 2017 INFO : Finished modelling Sun Jul 23 17:40:32 2017 STATUS CHANGED : R -> P Sun Jul 23 17:40:32 2017 INFO : Checking topology... Sun Jul 23 22:22:20 2017 INFO : Knot matrices done... Sun Jul 23 22:46:19 2017 INFO : Some knots found! Sun Jul 23 22:46:24 2017 INFO : Some lassos found! Sun Jul 23 22:46:24 2017 INFO : Finishing... Sun Jul 23 22:46:24 2017 INFO : Job done Sun Jul 23 22:46:24 2017 STATUS CHANGED : P -> F Sun Jul 23 22:46:24 2017 STATUS CHANGED : F -> F |
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