| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Lasso | L +1C | -- | -- | 24-207 | ||||
| Model 2 | Lasso | L +1C | -- | -- | 24-207 | ||||
| Model 3 | Lasso | L +1C | -- | -- | 24-207 | ||||
| Model 4 | Lasso | L +1C | -- | -- | 24-207 | ||||
| Model 5 | Lasso | L +1C | -- | -- | 24-207 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5JN8 |
C |
Unknot |
99.24% |
100.00% |
100.00% |
0.55 |
..Target: --WCYEVQAESSNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTVQNNGHSVMMLLENKASISGGGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNIPKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSLTTPTCDEKVVWTVFREPIQLHREQILAFSQKLYYDKEQTVSMKDNVRPLQQLGQRTVIKS |
||||
Fri Dec 1 09:48:33 2017 JOB CREATED : 2c5c3452-7df6-4819-806a-85b92a537ff4 Sat Dec 2 01:44:02 2017 STATUS CHANGED : N -> R Sat Dec 2 01:44:02 2017 INFO : JOB STARTED AT: 2017-12-02 01:44:02.069363 Sat Dec 2 01:44:02 2017 INFO : METHOD: 1 Sat Dec 2 01:44:02 2017 INFO : Building Profile... Sat Dec 2 01:44:02 2017 INFO : --E-value set to 0.001-- Sat Dec 2 01:53:27 2017 INFO : Homologue pool found... Sat Dec 2 01:53:27 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 02:26:42 2017 INFO : Starting homologue filtering... Sat Dec 2 02:27:28 2017 INFO : Getting structures from PDB... Sat Dec 2 02:27:34 2017 INFO : Creating modelling alignment... Sat Dec 2 02:27:34 2017 INFO : Modelling... Sat Dec 2 02:34:24 2017 INFO : Model 1 built Sat Dec 2 02:34:24 2017 INFO : Validating Calpha distances... Sat Dec 2 02:34:24 2017 INFO : Model 1 distances correct: True Sat Dec 2 02:34:24 2017 INFO : Modelling... Sat Dec 2 02:41:15 2017 INFO : Model 2 built Sat Dec 2 02:41:15 2017 INFO : Validating Calpha distances... Sat Dec 2 02:41:15 2017 INFO : Model 2 distances correct: True Sat Dec 2 02:41:15 2017 INFO : Modelling... Sat Dec 2 02:51:58 2017 INFO : Model 3 built Sat Dec 2 02:51:58 2017 INFO : Validating Calpha distances... Sat Dec 2 02:51:58 2017 INFO : Model 3 distances correct: True Sat Dec 2 02:51:58 2017 INFO : Modelling... Sat Dec 2 02:58:28 2017 INFO : Model 4 built Sat Dec 2 02:58:28 2017 INFO : Validating Calpha distances... Sat Dec 2 02:58:28 2017 INFO : Model 4 distances correct: True Sat Dec 2 02:58:28 2017 INFO : Modelling... Sat Dec 2 03:13:09 2017 INFO : Model 5 built Sat Dec 2 03:13:09 2017 INFO : Validating Calpha distances... Sat Dec 2 03:13:09 2017 INFO : Model 5 distances correct: True Sat Dec 2 03:13:42 2017 INFO : Finished modelling Sat Dec 2 03:13:42 2017 STATUS CHANGED : R -> P Sat Dec 2 03:13:42 2017 INFO : Checking topology... Sat Dec 2 03:14:32 2017 INFO : Knot matrices done... Sat Dec 2 03:14:39 2017 INFO : No knots found... Sat Dec 2 03:15:03 2017 INFO : Some lassos found! Sat Dec 2 03:15:03 2017 INFO : Finishing... Sat Dec 2 03:15:03 2017 STATUS CHANGED : P -> E Sat Dec 2 03:15:03 2017 ERROR : Error while finishing Sat Dec 2 03:15:03 2017 STATUS CHANGED : E -> F |
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