| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1EFT |
A |
Unknot |
28.40% |
90.48% |
38.10% |
1.55 |
..Target: ----MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE--PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIP---ADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVE---VETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKG-RASYTMEFLK-----------YDEAPSNVAQAVIEARGK |
||||
2XEX |
B |
Unknot |
60.00% |
52.38% |
42.86% |
1.49 |
..Target: MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEA-RGK |
||||
3WYA |
A |
Unknot |
30.81% |
47.62% |
9.52% |
1.39 |
..Target: MARTTPIARYRNIGISAHIDAGKTTTTERILFYTG---VNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHR-INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPR-IAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING-ILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQ-------MHANKREEIKEVRAGD----IAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARGK |
||||
Sun Jul 23 14:56:24 2017 JOB CREATED : 2ca71207-913b-4167-8ce9-7e7d21e0c691 Sun Jul 23 17:42:02 2017 STATUS CHANGED : N -> R Sun Jul 23 17:42:02 2017 INFO : JOB STARTED AT: 2017-07-23 17:42:02.388930 Sun Jul 23 17:42:02 2017 INFO : METHOD: 1 Sun Jul 23 17:42:02 2017 INFO : Precalculated profile found... Sun Jul 23 17:42:02 2017 INFO : Homologue pool found... Sun Jul 23 17:42:02 2017 INFO : Verifying structure sequences of homologues... Sun Jul 23 17:52:05 2017 INFO : Starting homologue filtering... Sun Jul 23 17:53:22 2017 INFO : Getting structures from PDB... Sun Jul 23 17:53:45 2017 INFO : Creating modelling alignment... Sun Jul 23 17:53:45 2017 INFO : Modelling... Sun Jul 23 22:33:02 2017 INFO : Model 1 built Sun Jul 23 22:33:02 2017 INFO : Validating Calpha distances... Sun Jul 23 22:33:02 2017 INFO : Model 1 distances correct: True Sun Jul 23 22:33:02 2017 INFO : Modelling... Mon Jul 24 01:01:13 2017 INFO : Model 2 built Mon Jul 24 01:01:13 2017 INFO : Validating Calpha distances... Mon Jul 24 01:01:13 2017 INFO : Model 2 distances correct: True Mon Jul 24 01:01:13 2017 INFO : Modelling... Mon Jul 24 05:17:32 2017 INFO : Model 3 built Mon Jul 24 05:17:32 2017 INFO : Validating Calpha distances... Mon Jul 24 05:17:32 2017 INFO : Model 3 distances correct: True Mon Jul 24 05:17:32 2017 INFO : Modelling... Mon Jul 24 07:23:03 2017 INFO : Model 4 built Mon Jul 24 07:23:03 2017 INFO : Validating Calpha distances... Mon Jul 24 07:23:03 2017 INFO : Model 4 distances correct: True Mon Jul 24 07:23:03 2017 INFO : Modelling... Mon Jul 24 10:42:22 2017 INFO : Model 5 built Mon Jul 24 10:42:22 2017 INFO : Validating Calpha distances... Mon Jul 24 10:42:22 2017 INFO : Model 5 distances correct: True Mon Jul 24 10:43:05 2017 INFO : Finished modelling Mon Jul 24 10:43:05 2017 STATUS CHANGED : R -> P Mon Jul 24 10:43:05 2017 INFO : Checking topology... Mon Jul 24 11:22:00 2017 INFO : Knot matrices done... Mon Jul 24 11:22:00 2017 INFO : No knots found... Mon Jul 24 11:22:00 2017 INFO : No lassos found... Mon Jul 24 11:22:00 2017 INFO : Finishing... Mon Jul 24 11:22:01 2017 INFO : Job done Mon Jul 24 11:22:01 2017 STATUS CHANGED : P -> F Mon Jul 24 11:22:01 2017 STATUS CHANGED : F -> F |
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