GapRepairer

Notice: All gaps were below 2 aa in length - they won't be described below.

Models

Number of gaps:0

Gap lengths:

Model	Entanglement	Average
		DOPE-HR
Model 1	Unknot	-37066
Model 2	Unknot	-37045
Model 3	Unknot	-37053
Model 4	Unknot	-36817
Model 5	Unknot	-37016
Colour the base model according to the B-factor (lowest to highest)			Reload

Warning: All models are renumbered - the first residue in the structure has index 1.

Mix & match

Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here

DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.

Warning: No templates were used. Models were generated using de novo prediction. Possible reasons include: no homologues similar enough; homologues do not cover the gaps in the target; all gaps at most 2 amino acids long.

Download Files Models Similarity profile Modelling alignment

Job Log

Fri Jan 31 18:18:20 2020	JOB CREATED : 2da79c1a-e6ab-45f4-b20f-8aeeb2b6f95b
Fri Jan 31 18:19:01 2020	STATUS CHANGED : N -> R
Fri Jan 31 18:19:01 2020	INFO : JOB STARTED AT: 2020-01-31 18:19:01.875331
Fri Jan 31 18:19:01 2020	INFO : METHOD: 2
Fri Jan 31 18:19:01 2020	INFO : Building Profile...
Fri Jan 31 18:19:01 2020	INFO : --E-value set to 1.0--
Fri Jan 31 18:27:05 2020	INFO : Homologue pool found...
Fri Jan 31 18:27:05 2020	INFO : Verifying structure sequences of homologues...
Fri Jan 31 19:19:45 2020	INFO : Starting homologue filtering...
Fri Jan 31 19:20:12 2020	INFO : Getting structures from PDB...
Fri Jan 31 19:20:12 2020	INFO : Creating modelling alignment...
Fri Jan 31 19:20:12 2020	INFO : Modelling...
Fri Jan 31 19:20:33 2020	INFO : Model 1 built
Fri Jan 31 19:20:33 2020	INFO : Validating Calpha distances...
Fri Jan 31 19:20:33 2020	INFO : Model 1 distances correct: True
Fri Jan 31 19:20:33 2020	INFO : Modelling...
Fri Jan 31 19:20:52 2020	INFO : Model 2 built
Fri Jan 31 19:20:52 2020	INFO : Validating Calpha distances...
Fri Jan 31 19:20:52 2020	INFO : Model 2 distances correct: True
Fri Jan 31 19:20:52 2020	INFO : Modelling...
Fri Jan 31 19:21:12 2020	INFO : Model 3 built
Fri Jan 31 19:21:12 2020	INFO : Validating Calpha distances...
Fri Jan 31 19:21:12 2020	INFO : Model 3 distances correct: True
Fri Jan 31 19:21:12 2020	INFO : Modelling...
Fri Jan 31 19:21:31 2020	INFO : Model 4 built
Fri Jan 31 19:21:31 2020	INFO : Validating Calpha distances...
Fri Jan 31 19:21:31 2020	INFO : Model 4 distances correct: True
Fri Jan 31 19:21:31 2020	INFO : Modelling...
Fri Jan 31 19:21:50 2020	INFO : Model 5 built
Fri Jan 31 19:21:50 2020	INFO : Validating Calpha distances...
Fri Jan 31 19:21:50 2020	INFO : Model 5 distances correct: True
Fri Jan 31 19:22:07 2020	INFO : Finished modelling
Fri Jan 31 19:22:07 2020	STATUS CHANGED : R -> P
Fri Jan 31 19:22:17 2020	INFO : Finished edm surfaces: success
Fri Jan 31 19:22:17 2020	INFO : Checking topology...
Fri Jan 31 19:22:39 2020	INFO : Knot matrices done...
Fri Jan 31 19:22:39 2020	INFO : No knots found...
Fri Jan 31 19:22:39 2020	INFO : No lassos found...
Fri Jan 31 19:22:39 2020	INFO : Finishing...
Fri Jan 31 19:22:39 2020	INFO : Job done
Fri Jan 31 19:22:39 2020	STATUS CHANGED : P -> F
Fri Jan 31 19:22:39 2020	STATUS CHANGED : F -> F

3L3Z chain A