Job name:

4ZQK chain B

39e57d27-a87f-49c5-a039-b6ecce7f74b0
Finished
Models Number of gaps:1 Gap lengths: 9
Model Entanglement Average DOPE-HR (by gap length)
DOPE-HR 1st gap
Model 1 Unknot -10572
Model 2 Unknot -10575
Model 3 Unknot -10446
Model 4 Unknot -10302
Model 5 Unknot -10189
Reload
Warning: All models are renumbered - the first residue in the structure has index 1.
Mix & match
Provided protein had only one gap - thus there are no gap-filling combinations to be made.

Pro Tip: Since you provided a structure that contains some crystallographic information you can verify our models using the wwPDB service.
Validity report for the RCSB PDB structure you were repairing can be accessed here
DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better.
Since DOPE is calculated against the neighbours of a given amino acid, the scores
can vary between unmoved segments of different models. See here for more information.
Help
PDB
code		 Chain Entanglement
type		 Seq
identity		 Total gap
coverage		 Total gap
identity		 RMSD [Å] Pairwise alignment to the target: gap


5B8C
C
Unknot
98.28%
100.00%
100.00%
0.81

..Target: --NPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE
Template: SWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE
Help
PDB
code		 Chain Knot
type		 Gap
coverage		 Gap
identity		 >Target_Sequence: gap

FPEDRSQPGQDSRFR
5B8C C Unknot 100.00% 100.00%

FPEDRSQPGQDSRFR

Models
Similarity profile
Modelling alignment

Tue Feb 25 16:28:13 2020	JOB CREATED : 39e57d27-a87f-49c5-a039-b6ecce7f74b0
Tue Feb 25 16:29:02 2020	STATUS CHANGED : N -> R
Tue Feb 25 16:29:02 2020	INFO : JOB STARTED AT: 2020-02-25 16:29:02.254768
Tue Feb 25 16:29:02 2020	INFO : METHOD: 1
Tue Feb 25 16:29:02 2020	INFO : Building Profile...
Tue Feb 25 16:29:02 2020	INFO : --E-value set to 1.0--
Tue Feb 25 16:36:34 2020	INFO : Homologue pool found...
Tue Feb 25 16:36:34 2020	INFO : Verifying structure sequences of homologues...
Tue Feb 25 21:36:39 2020	INFO : Starting homologue filtering...
Tue Feb 25 21:36:59 2020	INFO : Getting structures from PDB...
Tue Feb 25 21:37:02 2020	INFO : Creating modelling alignment...
Tue Feb 25 21:37:02 2020	INFO : Modelling...
Tue Feb 25 21:38:51 2020	INFO : Model 1 built
Tue Feb 25 21:38:51 2020	INFO : Validating Calpha distances...
Tue Feb 25 21:38:51 2020	INFO : Model 1 distances correct: True
Tue Feb 25 21:38:51 2020	INFO : Modelling...
Tue Feb 25 21:40:39 2020	INFO : Model 2 built
Tue Feb 25 21:40:39 2020	INFO : Validating Calpha distances...
Tue Feb 25 21:40:39 2020	INFO : Model 2 distances correct: True
Tue Feb 25 21:40:39 2020	INFO : Modelling...
Tue Feb 25 21:42:30 2020	INFO : Model 3 built
Tue Feb 25 21:42:30 2020	INFO : Validating Calpha distances...
Tue Feb 25 21:42:30 2020	INFO : Model 3 distances correct: True
Tue Feb 25 21:42:30 2020	INFO : Modelling...
Tue Feb 25 21:44:12 2020	INFO : Model 4 built
Tue Feb 25 21:44:12 2020	INFO : Validating Calpha distances...
Tue Feb 25 21:44:12 2020	INFO : Model 4 distances correct: True
Tue Feb 25 21:44:12 2020	INFO : Modelling...
Tue Feb 25 21:46:40 2020	INFO : Model 5 built
Tue Feb 25 21:46:40 2020	INFO : Validating Calpha distances...
Tue Feb 25 21:46:40 2020	INFO : Model 5 distances correct: True
Tue Feb 25 21:46:48 2020	INFO : Finished modelling
Tue Feb 25 21:46:48 2020	STATUS CHANGED : R -> P
Tue Feb 25 21:46:55 2020	INFO : Finished edm surfaces: success
Tue Feb 25 21:46:55 2020	INFO : Checking topology...
Tue Feb 25 21:47:04 2020	INFO : Knot matrices done...
Tue Feb 25 21:47:04 2020	INFO : No knots found...
Tue Feb 25 21:47:04 2020	INFO : No lassos found...
Tue Feb 25 21:47:04 2020	INFO : Finishing...
Tue Feb 25 21:47:05 2020	INFO : Job done
Tue Feb 25 21:47:05 2020	STATUS CHANGED : P -> F
Tue Feb 25 21:47:05 2020	STATUS CHANGED : F -> F
GapRepairer | Interdisciplinary Laboratory of Biological Systems Modelling