| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Slipknot | S 31 | 196-375 | 375-407 | -- | -- | |||
| Lasso | L +1C | -- | -- | 243-282 | |||||
| Model 2 | Slipknot | S 31 | 196-375 | 375-407 | -- | -- | |||
| Lasso | L -2C | -- | -- | 241-280 | |||||
| Model 3 | Slipknot | S 31 | 196-384 | 384-407 | -- | -- | |||
| Lasso | L +1C | -- | -- | 243-282 | |||||
| Model 4 | Slipknot | S 31 | 196-375 | 375-408 | -- | -- | |||
| Lasso | L +1C | -- | -- | 243-282 | |||||
| Model 5 | Slipknot | S 31 | 197-375 | 375-407 | -- | -- | |||
| Lasso | L +1C | -- | -- | 243-282 | |||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
5A1S |
A |
Unknot |
92.15% |
100.00% |
76.92% |
0.71 |
..Target: --LLGFKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRKASFKVEEDEKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMMI-- |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Tue Jul 23 10:42:37 2019 JOB CREATED : 45bdfecc-f7ee-4ea7-bf6c-4a59a470a928 Tue Jul 23 10:43:02 2019 STATUS CHANGED : N -> R Tue Jul 23 10:43:02 2019 INFO : JOB STARTED AT: 2019-07-23 10:43:02.391648 Tue Jul 23 10:43:02 2019 INFO : METHOD: 1 Tue Jul 23 10:43:02 2019 INFO : Building Profile... Tue Jul 23 10:43:02 2019 INFO : --E-value set to 0.001-- Tue Jul 23 10:52:08 2019 INFO : Homologue pool found... Tue Jul 23 10:52:08 2019 INFO : Verifying structure sequences of homologues... Tue Jul 23 10:52:15 2019 INFO : Starting homologue filtering... Tue Jul 23 10:52:21 2019 INFO : Getting structures from PDB... Tue Jul 23 10:52:27 2019 INFO : Creating modelling alignment... Tue Jul 23 10:52:27 2019 INFO : Adding other chains Tue Jul 23 10:52:27 2019 INFO : Modelling... Tue Jul 23 11:01:17 2019 INFO : Model 1 built Tue Jul 23 11:01:17 2019 INFO : Validating Calpha distances... Tue Jul 23 11:01:17 2019 INFO : Model 1 distances correct: True Tue Jul 23 11:01:17 2019 INFO : Modelling... Tue Jul 23 11:10:00 2019 INFO : Model 2 built Tue Jul 23 11:10:00 2019 INFO : Validating Calpha distances... Tue Jul 23 11:10:00 2019 INFO : Model 2 distances correct: True Tue Jul 23 11:10:00 2019 INFO : Modelling... Tue Jul 23 11:18:49 2019 INFO : Model 3 built Tue Jul 23 11:18:49 2019 INFO : Validating Calpha distances... Tue Jul 23 11:18:49 2019 INFO : Model 3 distances correct: True Tue Jul 23 11:18:49 2019 INFO : Modelling... Tue Jul 23 11:27:46 2019 INFO : Model 4 built Tue Jul 23 11:27:46 2019 INFO : Validating Calpha distances... Tue Jul 23 11:27:46 2019 INFO : Model 4 distances correct: True Tue Jul 23 11:27:46 2019 INFO : Modelling... Tue Jul 23 11:36:23 2019 INFO : Model 5 built Tue Jul 23 11:36:23 2019 INFO : Validating Calpha distances... Tue Jul 23 11:36:23 2019 INFO : Model 5 distances correct: True Tue Jul 23 11:38:33 2019 INFO : Finished modelling Tue Jul 23 11:38:33 2019 STATUS CHANGED : R -> P Tue Jul 23 11:38:42 2019 INFO : Finished edm surfaces: success Tue Jul 23 11:38:42 2019 INFO : Checking topology... Tue Jul 23 11:42:17 2019 INFO : Knot matrices done... Tue Jul 23 11:43:32 2019 INFO : Some knots found! Tue Jul 23 11:43:35 2019 INFO : Some lassos found! Tue Jul 23 11:43:35 2019 INFO : Finishing... Tue Jul 23 11:43:36 2019 INFO : Job done Tue Jul 23 11:43:36 2019 STATUS CHANGED : P -> F Tue Jul 23 11:43:36 2019 STATUS CHANGED : F -> F |
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