| Model | Type | Knot core | Slipknot | Lasso | Piercing | Show | |||
|---|---|---|---|---|---|---|---|---|---|
| range | loop range | loop | position | in JSmol | |||||
| Model 1 | Knot | K 31 | 12-271 | -- | -- | -- | |||
| Lasso | LL +2,+1 | -- | -- | 48-244 | +23,-40 | ||||
| Model 2 | Knot | K 31 | 12-271 | -- | -- | -- | |||
| Lasso | LL +2,+1 | -- | -- | 48-244 | +23,-42 | ||||
| Model 3 | Knot | K 31 | 12-271 | -- | -- | -- | |||
| Lasso | LL +2,+1 | -- | -- | 48-244 | +23,-42 | ||||
| Model 4 | Knot | K 31 | 12-271 | -- | -- | -- | |||
| Lasso | LL +2,+1 | -- | -- | 48-244 | +23,-42 | ||||
| Model 5 | Knot | K 31 | 12-271 | -- | -- | -- | |||
| Lasso | LL +2,+1 | -- | -- | 48-244 | +23,-41 | ||||
| None | |||||||||
| DOPE (Discrete Optimized Protein Energy) score per residue. The lower the score, the better. Since DOPE is calculated against the neighbours of a given amino acid, the scores can vary between unmoved segments of different models. See here for more information. |
| PDB code |
Chain | Entanglement type |
Seq identity |
Total gap coverage |
Total gap identity |
RMSD [Å] | Pairwise alignment to the target: gap | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
1FUG |
A |
K +31 |
70.23% |
184.62% |
91.54% |
1.01 |
..Target: SMANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWEAADKALALAEAAGV- |
||||
2OBV |
A |
K +31 |
57.55% |
192.31% |
66.15% |
0.79 |
..Target: SMA-NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYV----DGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWEAADKALALAEAAGV |
||||
|
Models Similarity profile Modelling alignment Raw knot fingerprint matrices: Model_1 Model_2 Model_3 Model_4 Model_5 |
Fri Dec 1 09:48:58 2017 JOB CREATED : 45fc4985-1456-4293-a384-b9b494201172 Sat Dec 2 02:04:03 2017 STATUS CHANGED : N -> R Sat Dec 2 02:04:03 2017 INFO : JOB STARTED AT: 2017-12-02 02:04:03.084545 Sat Dec 2 02:04:03 2017 INFO : METHOD: 1 Sat Dec 2 02:04:03 2017 INFO : Precalculated profile found... Sat Dec 2 02:04:03 2017 INFO : Homologue pool found... Sat Dec 2 02:04:03 2017 INFO : Verifying structure sequences of homologues... Sat Dec 2 02:07:23 2017 INFO : Starting homologue filtering... Sat Dec 2 02:08:50 2017 INFO : Getting structures from PDB... Sat Dec 2 02:08:59 2017 INFO : Creating modelling alignment... Sat Dec 2 02:08:59 2017 INFO : Modelling... Sat Dec 2 02:20:02 2017 INFO : Model 1 built Sat Dec 2 02:20:02 2017 INFO : Validating Calpha distances... Sat Dec 2 02:20:02 2017 INFO : Model 1 distances correct: True Sat Dec 2 02:20:02 2017 INFO : Modelling... Sat Dec 2 02:30:44 2017 INFO : Model 2 built Sat Dec 2 02:30:44 2017 INFO : Validating Calpha distances... Sat Dec 2 02:30:44 2017 INFO : Model 2 distances correct: True Sat Dec 2 02:30:44 2017 INFO : Modelling... Sat Dec 2 02:58:42 2017 INFO : Model 3 built Sat Dec 2 02:58:42 2017 INFO : Validating Calpha distances... Sat Dec 2 02:58:42 2017 INFO : Model 3 distances correct: True Sat Dec 2 02:58:42 2017 INFO : Modelling... Sat Dec 2 03:09:57 2017 INFO : Model 4 built Sat Dec 2 03:09:57 2017 INFO : Validating Calpha distances... Sat Dec 2 03:09:57 2017 INFO : Model 4 distances correct: True Sat Dec 2 03:09:57 2017 INFO : Modelling... Sat Dec 2 03:21:03 2017 INFO : Model 5 built Sat Dec 2 03:21:03 2017 INFO : Validating Calpha distances... Sat Dec 2 03:21:03 2017 INFO : Model 5 distances correct: True Sat Dec 2 03:21:53 2017 INFO : Finished modelling Sat Dec 2 03:21:53 2017 STATUS CHANGED : R -> P Sat Dec 2 03:21:53 2017 INFO : Checking topology... Sat Dec 2 03:24:20 2017 INFO : Knot matrices done... Sat Dec 2 03:26:03 2017 INFO : Some knots found! Sat Dec 2 03:28:06 2017 INFO : Some lassos found! Sat Dec 2 03:28:06 2017 INFO : Finishing... Sat Dec 2 03:28:06 2017 STATUS CHANGED : P -> E Sat Dec 2 03:28:06 2017 ERROR : Error while finishing Sat Dec 2 03:28:06 2017 STATUS CHANGED : E -> F |
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